barSeed - Barley Seed Development Database

Probe CUST_3847_PI390587928

Source Contig U35_125

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3847_PI390587928	Hv_44K_v2	CAGCAAGTATAAAAGAACTGCTTCTGAACTATGTTTTCATTTGTATATCCTTACCCCTGA	1290	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15337.2	1798	2e-24	1456 - 1515	100	60 / 60	plus	ABC00938
MLOC	MLOC_15337.3	2207	2e-24	1363 - 1422	100	60 / 60	plus	ABC00938
JLOC1	JLOC1_10520.4	1090	8e-25	1023 - 1082	100	60 / 60	plus
JLOC1	JLOC1_10520.3	1262	8e-25	1195 - 1254	100	60 / 60	plus
JLOC1	JLOC1_10520.2	2450	8e-25	1974 - 2033	100	60 / 60	plus
JLOC1	JLOC1_10520.1	2448	8e-25	1974 - 2033	100	60 / 60	plus
Harvest21	ABC00310	1359	3e-25	1291 - 1350	100	60 / 60	plus
Harvest35	U35_125	1366	3e-25	1291 - 1350	100	60 / 60	plus

Contig Sequence (1366 bp)

>U35_125 1366 Hv_44K_v2
CCGCTCTCCCTCCACACAGGAGAGGAGAGGAGAGGAGCACCAGAGCCGGGGAGCGAGCGA
GCGAGCTCGGTCCCGCCGGACGGAGAAACCCCACCCCCACCCCGCCCCAGCAGCCAGCGC
CGGAGCGCCTGCCGCCGCCGGTCCGCTCGAATTCCAGGGCCCGCCGTCTGCGCAGGGGAA
GAGGAAGGAAGGAGGAAGCGTGGGGAGCGTCGGGGCCTTTGCTCGGGTTACTCCGTCGCT
ACGGTCCGAGGCCGTCGCGTCAGCTTCGCTTGCTCGGGCTGCTGGAGGGTATGAGAGACG
AAAACAACAGCTAGAGGATAGCTCAGATTAAGCCCTTTCATTAAGGATAGAATGGGTGGC
TGCTGTTGTTTTTCATCAAGAGCGGAAGCGGACAGAGCACCGGTTCATATCTATCATCAA
CAAAATCAAGAAGAGCATGAACCTTTGTCTTCTGCCTTTGATGGATCATCTCCGGCTTCT
GCTATAGTCGCAGTTGACACAAACCTGGACACATCCACTCCTGACACTTATCGGGCGCCC
CCTGCACCATTGCCTTATGATGTTAGCTTGCCAGTTACCGAAAACCCAGATTTGGAGAAG
TCAGATATTAAAAGCAAAACAGATGATCAGCAGGAATCTTTAAAGGTGGATGAATATGAA
TCATGTGAAAAAGGTGTCCCTGAAGATAAGACTGAGGAGGAGGATGTTTGCCCAATCTGC
CTCGAAGAATATGATGAAGAAAATCCCCGCTCCATTACCAAATGTGACCATCATTTCCAT
CTCTGTTGCATCCTCGAATGGATGGAGCGAAGTGAGACTTGCCCAGTCTGTGACCAGATA
ACTTTGATAGATGAGATGTACGAATAGCATGTTGACCCCGGCGGATCCTCTCTAGGAGCT
CTTGCGTGCCTACCGAGGAGGTTTAGTACTAGTCCTTTTTTCTATGGGGGAAGTAAAACC
AGCAACTATTCTGCTCCTAATATGATAGTATGATCTGGTGGAGGTGCTACTGGAATGCAT
CTTGGGAGAACAAAATGGGAAATAATGAAAGGAAGGAAACTGGAAGAAATATGCTCTAAA
AAAACATCCATCCCTGCGTTTATACTAGCATTTGTGTCAAGCTGTGGCTGTTTATGGTAA
CAGGAGGATTAGCAGGCTGCATCTGCAATATGCACTTCATACTAGTCGAAAACTCTTGAA
TCTAGCTCTCTTTTTCATGCTTTCTGGATTTTGGGTCGCGTTTTCGGATTGAGCGTCTGT
ATAAACCATCACATACTAGATATAGGGTGACAGCAAGTATAAAAGAACTGCTTCTGAACT
ATGTTTTCATTTGTATATCCTTACCCCTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_125 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g18947.1	174	2e-108	protein\|zinc finger, C3HC4 type domain containing protein, expressed
Brachypodium v1_2	Bradi3g55780.2	173	7e-120
Arabidopsis v10	None