- Probe CUST_38464_PI390587928
- Source Contig U35_3153
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_38464_PI390587928 | Hv_44K_v2 | ACATCACAATGTATGAAGTCATGCAGTACACAACATTACAGTTCACGCACTACAACAACA | 963 | GeneList: red MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 1.083 | 1.816 | 1.176 | 0.889 | 0.273 | 0.349 |
Raw | 72.645 | 188.803 | 108.330 | 131.234 | 13.637 | 19.706 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK367179 | 1036 | 2e-24 | 897 - 956 | 100 | 60 / 60 | plus | ABC10591 |
MLOC | AK374558 | 4099 | 2e-24 | 3784 - 3843 | 100 | 60 / 60 | plus | ABC10591 |
MLOC | MLOC_64213.1 | 2423 | 2e-24 | 864 - 923 | 100 | 60 / 60 | plus | ABC10591 ABC12095 |
MLOC | MLOC_64213.2 | 2859 | 2e-24 | 864 - 923 | 100 | 60 / 60 | plus | ABC10591 ABC12095 |
MLOC | MLOC_64213.5 | 2185 | 2e-24 | 857 - 916 | 100 | 60 / 60 | plus | ABC10591 ABC12095 |
MLOC | MLOC_64213.6 | 2171 | 2e-24 | 857 - 916 | 100 | 60 / 60 | plus | ABC10591 ABC12095 |
MLOC | MLOC_64213.3 | 2463 | 2e-24 | 864 - 923 | 100 | 60 / 60 | plus | ABC10591 ABC12095 |
MLOC | MLOC_64213.4 | 2449 | 2e-24 | 864 - 923 | 100 | 60 / 60 | plus | ABC10591 ABC12095 |
JLOC1 | JLOC1_42140.4 | 2489 | 8e-25 | 862 - 921 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_42140.3 | 2521 | 8e-25 | 862 - 921 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_42140.2 | 2885 | 8e-25 | 862 - 921 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_42140.1 | 2475 | 8e-25 | 862 - 921 | 100 | 60 / 60 | plus | |
Harvest21 | ABC50946 | 600 | 3e-25 | 10 - 69 | 100 | 60 / 60 | minus | |
Harvest35 | U35_3153 | 1026 | 3e-25 | 964 - 1023 | 100 | 60 / 60 | plus |
Contig Sequence (1026 bp)
>U35_3153 1026 Hv_44K_v2 CCCCACTCCACATCGGTGCCGCCAATTACCTGATCGATACGGAGCACCACCGTCGTCGAT GAACGACTCCATTGGCGACCACCATCCTCCAGCGAACTCCTTCCCTTCTTTTGAGCTAGC TTCCTCTCTAACCAGGTCCCCTCTCGGCAAGGTTCACCGAACACCAACCCGCGGGTCCGC ATCCTCCATGTCCTCTACAACGAAGCAACAGTGTCGACCCTCTGCAAATCTTCCCATGGA TCAACATCGCTGCCTTCTTCTCCCCTTCCTTTGTCAGGGCTATAGCTGCAAAGGCAACTC TAGCCGGAATAATTGATTCAACTAGAGGTGATCCAATGGAAAAGCTGGTCACAACCTCTT AGAAGAAATTCGCAAGAAGATCGAGAAGTGGCAAGTACTGCCTCCTGCAAAGCTTCCAAA ACCACTTCATGTTCTAGATTCTGAACCTAAAAAGAAGAGAGGGGGTCGCCGCCTTCGAAA AATGAAAGAAAGATATGTGGTGACTGATATGATGAAGTTTGCAAACTGAATCCAGTTCGG TATACCAGAGGAGAGCCCATTAGGTGATGGTTTGGGGGAAGGTTATGGCATGCTTGGGCA GGCCGGGAATGGGAGGCTACGTGTCTCAGCTGCACAGAACAAACTTGCTGCTAAAGTGGC AAAAAAAATTCAAGGAGAAGAGTTATGGTAGCAGTGGTGCAACATCTGGACTGACATCTA GTTTGGCCTTTACACCAGTTCAGGGAATAGAGCTGTCAAACCCACAGGCACATGGGAACC TTCTTGGAAGTGGAACCCAGAACACCTACTTCTCGGAGAACGGAACATTTTCTCGGATGA GTAGGCCTGGAGGCTAGAATCTGAAAATGGAAGGACCTGATTCTCAGTTTTACCACGTGA TTTGTAAAATAAGTACAGTTTCCGCGCAAAATATATACATGTAAATACAGTTCATGCACT ACAACATCACAATGTATGAAGTCATGCAGTACACAACATTACAGTTCACGCACTACAACA ACACAA
Homology of Contig U35_3153 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |