barSeed - Barley Seed Development Database

Probe CUST_38450_PI390587928

Source Contig U35_3170

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38450_PI390587928	Hv_44K_v2	ACTTCCGCTTCTACAAGAGCGGCAAGATAGAGCGCCTTCACCGGCCTCCCATCCTCCCAG	103	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.745	1.197	1.831	1.352	0.877	0.527
Raw	8.888	22.928	29.373	33.430	7.523	4.450

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59654.2	920	2e-24	95 - 154	100	60 / 60	plus	ABC13949 ABC41354
MLOC	MLOC_59654.1	1605	2e-24	1318 - 1377	100	60 / 60	minus	ABC13949 ABC41354
JLOC1	JLOC1_38837.1	1537	8e-25	1271 - 1330	100	60 / 60	minus
JLOC1	JLOC1_38835.1	1265	8e-25	208 - 267	100	60 / 60	plus
Harvest21	ABC13192	535	3e-25	73 - 132	100	60 / 60	plus
Harvest35	U35_3170	566	3e-25	104 - 163	100	60 / 60	plus

Contig Sequence (566 bp)

>U35_3170 566 Hv_44K_v2
TGTTGGCCTACTGAACAACACCAAGGCCCAAGCCAAACACCATCTCCACTCTCCACAGCC
ATGGACGCCGACGCCGACACGGTGGTGTTCGAGGCACCGGCGCACTTCCGCTTCTACAAG
AGCGGCAAGATAGAGCGCCTTCACCGGCCTCCCATCCTCCCAGCCGGAGTCGACGAGGCC
ACCGGCGTCACGTCCAAGGACGTCGTCCTCGACGCGGACACCGGCCTCTCCGTGCGCCTC
TACCTTCCCAAGCTCCAGGACCCTTCCGCGAAGCTCCCGGTCCTCGTCTACTTCCACGGC
GGCTCCTTCCTCATCGAGTCGGCCGACTCCTCCACGTACCACAACTACGTCAACGCCCTC
GCCGCGGCGGCCGGCGTCCTCGCCGTGTCCGTCGACTACCGCCTGGCCCCGGAGCACCCG
CTCCCCGCTGCCTACGACGACTCCTGGGCCGCGCTCCAGTGGGCGGCGTCGGCGCAGGAC
GACTGGATCCGCGAGCACGGCGACACGGCCCGCCTGTTCCTCGCCGGCGACAGCGCGGGG
GCCAACATCGTCCACGACATGCTCAT

Homology of Contig U35_3170 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g28630.1	316	8e-77	protein\|gibberellin receptor, putative, expressed
Brachypodium v1_2	Bradi4g32300.1	407	2e-61
Arabidopsis v10	None