- Probe CUST_38384_PI390587928
- Source Contig U35_17645
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_38384_PI390587928 | Hv_44K_v2 | CGAGGTTCAAAAGTAAATGTCGGGAATACAGATTCTACTGATCTTTTTTCTTTTCTTTCG | 411 | GeneList: greenyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 8.545 | 6.918 | 1.568 | 0.650 | 0.445 | 0.552 |
| Raw | 132.455 | 180.135 | 32.952 | 23.908 | 3.402 | 5.785 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK365640 | 984 | 2e-24 | 848 - 907 | 100 | 60 / 60 | plus | ABC07522 ABC40333 |
| MLOC | MLOC_53079.1 | 511 | 9e-22 | 1 - 58 | 98 | 58 / 59 | minus | ABC07522 ABC40333 |
| MLOC | MLOC_53079.2 | 947 | 9e-22 | 1 - 58 | 98 | 58 / 59 | minus | ABC07522 ABC40333 |
| JLOC1 | JLOC1_34064.1 | 1053 | 5e-22 | 890 - 947 | 98 | 58 / 59 | plus | |
| Harvest21 | ABC07523 | 539 | 3e-25 | 69 - 128 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC07522 | 923 | 2e-22 | 786 - 843 | 98 | 58 / 59 | plus | ABC07522 |
| Harvest35 | U35_17645 | 539 | 3e-25 | 412 - 471 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_17644 | 923 | 2e-22 | 786 - 843 | 98 | 58 / 59 | plus |
Contig Sequence (539 bp)
>U35_17645 539 Hv_44K_v2 AGCGTCAGCATCAACATGATCCCCACCACCAAGGAAGACATCCGCGACCTCGGCCCGCCC GACCAGGTCGCCGAGGCTTTGGTGCGGAAAGTCCTATCTCCGCCCACGCAGAAGACCAAG TTGATCGAAGCGAAAGAGACCGATATCGATGGAAGAGCTTATTACACTTTCGAGTTCACG GCCCAGGCTCCAAATTTCACTAGACATGCGCTTGGTACAATTACCATAGCAAATGGCAAA TTTTACACGTTGGCAACGGGTGCAAACGAGAGGAGATGGGACAAGATGAAGGACAGGCTA CATACAATCGTCGACTCTTTCAAAATCGAAACAAAAGTGTGAGCGATGTTTGAGGCATTG TGCCTATTTTCTTTGTTTTTAGTTTGTTCGTTTTCGGAGCTACAGCTGGCGCGAGGTTCA AAAGTAAATGTCGGGAATACAGATTCTACTGATCTTTTTTCTTTTCTTTCGAATACTCTT GTCTGCATATATATATCATTTCATCCTATGTAATGTATCCCTTGAAGTAAGGAGATCAA
Homology of Contig U35_17645 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os10g32400.2 | 201 | 2e-64 | protein|PsbP, putative, expressed |
| Brachypodium v1_2 | Bradi1g77047.1 | 238 | 1e-71 | |
| Arabidopsis v10 | AT3G55330.1 | 230 | 3e-53 | | Symbols: PPL1 | PsbP-like protein 1 | chr3:20514031-20515275 REVERSE LENGTH=230 |