barSeed - Barley Seed Development Database

Probe CUST_38383_PI390587928

Source Contig U35_17646

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38383_PI390587928	Hv_44K_v2	CGTTTCTGAGAATTTTGCGAGGGTTTGGAAACCTTAATAAGAGCTTTTTCTTTTCACATG	1213	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.942	2.827	1.171	0.858	0.495	0.617
Raw	6433.947	9484.600	3498.717	3984.817	821.403	1101.774

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK377032	1262	2e-24	1203 - 1262	100	60 / 60	plus	ABC08906
JLOC1	JLOC1_48118.2	1239	4e-23	1031 - 1090	98	59 / 60	plus
JLOC1	JLOC1_48118.1	1251	4e-23	1043 - 1102	98	59 / 60	plus
Harvest21	ABC08906	1273	6e-22	1202 - 1258	98	57 / 58	plus	ABC08906
Harvest35	U35_17646	1311	3e-25	1214 - 1273	100	60 / 60	plus

Contig Sequence (1311 bp)

>U35_17646 1311 Hv_44K_v2
AGACGTTTCGATCCCTCTCTCCTCCCCCCCCGCCCTCCTCCTCGGCGCCCGCCTCGCGAA
TCCGCCGGAAACCCCCCCGCCGCTCCCGGTTCTAGCGCAGCGCGGAGATGGTAGCCGCGC
GCTTCCTCGCGCGGGCCACGAGGCAATGCGCCGCCGCGGTGGTGGCCGCCTCTGCTAGGC
GGCCGCTCGGCGGCGTGGCGGTGGCCGCCGCTCGCCCGTTCGTCTCTTCCTTCGGCCCCG
CCAGGGTACCATATATGTTGAATCAGCCCTTGAGATACTCAAGCAACATCTTTCAAAGGT
TTGGCTTTTCATCTTCTACTCCTCAACAAAATGATAAGGAGGTACACGAAGCCAAAGACC
AGGAAAGTACTGCACATGAATCAAATGGTGAAGCTTCAAAGGAAGACAGTGGTTCGTCTG
GAAGTACAGAAGACCTTGATCTGTCAAAGGAGGATCTAGTGAAGCTAGTTTTTGAGAAGG
ATGAATTATTGACCTTGAAAGATGAAGAGGTCAAAGATATGAAGGACAAGGTTTTGCGCA
GCTATGCAGAAATGGAAAATGTCATTGCCCGGACAAAGCGTGAATCTGAGAACTCAAAAA
AATATGCAGTACAGAACTTCTCCAAGAGCTTGTTAGATGTTGCTGACAATTTGGCTAGAG
CTTCATCTGTTGTAAAGGAAAGCTTCTCAAAATTAGATACATCTGAAGATTCTAGTGGAG
CTGTACCGTTACTAAAAACCCTACTGGAGGGTGTAGACATGACTGATAAGCAACTTGGAG
AGGTTTTTAAGAAGTTTGGAGTCGAAAAGTTTGATCCAATGAATGAGAAATTTGATCCTG
ATAAGCATTTTGCACTTTTCCAAATTCCTGATCCTTCAAAACCATCCGGAACTGTTGCTT
CTGTTGTGAAGGTGGGGTACATGTTACATGATCGCGTGCTCCGTCCTGCGGAAGTTGGTG
TTACGGAGGGTGGTCCGTCCGAAGAGCCCGAGGACAAATCAAGTGGAGATTAGATTAAAT
CGGAATCTAGTGGAGTAAAATATACCAGAAGCAAGAAGGCGTAGCTGTTCCTGCTTGACA
ACCGGTACACTCATCAGCGAAGGAGCTTGGCGATTGCAGTGTTTCGGATTGTTTTTCAAT
GGTAAAACACAAGATTGGCTTGTTGAAATCCCATTTGTATGGGTGCACGTCACACAATTC
CTTAGCAGTACAACGTTTCTGAGAATTTTGCGAGGGTTTGGAAACCTTAATAAGAGCTTT
TTCTTTTCACATGAAAAAAAAAAATGAAACAAAATAAAAAAAAAAAAAAAA

Homology of Contig U35_17646 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g11250.1	303	3e-119	protein\|co-chaperone GrpE protein, putative, expressed
Brachypodium v1_2	Bradi4g27270.1	306	3e-146
Arabidopsis v10	AT4G26780.1	327	2e-83	\| Symbols: AR192 \| Co-chaperone GrpE family protein \| chr4:13485066-13486560 REVERSE LENGTH=327