barSeed - Barley Seed Development Database

Probe CUST_38340_PI390587928

Source Contig U35_43927

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38340_PI390587928	Hv_44K_v2	CTTCGTTCAGAATGTAGCTACTAATGTTTGCACATATTTCTTTACAAGTTTAGGGTTTCG	49	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_42601.1	316	2e-24	95 - 154	100	60 / 60	minus	ABC41226
MLOC	MLOC_32400.1	481	2e-23	45 - 102	100	58 / 58	minus	ABC15307 ABC41226
JLOC1	JLOC1_27573.1	316	8e-25	96 - 155	100	60 / 60	minus
Harvest21	ABC41226	535	3e-25	50 - 109	100	60 / 60	minus	ABC41226
Harvest35	U35_43927	535	3e-25	50 - 109	100	60 / 60	minus

Contig Sequence (535 bp)

>U35_43927 535 Hv_44K_v2
TTTTTTTTTTTTTTTTTAATCTTAAAAAAAAATTTGTATTAAGTTTATTCGAAACCCTAA
ACTTGTAAAGAAATATGTGCAAACATTAGTAGCTACATTCTGAACGAAGATTCTGTTTAA
TAACGCACGTCTCAAACATAAGTGCGGTGGGCGAGCGGGGCGCGGCGCATGGGCGAACGG
CGCGGTGGCCCGGGACAACCGACGCTGAACCGGCGCGACGAGCGGGGCGAGGGGGCGACG
ACCTTCGTTGCAAGTGGGGCGAGGGGGCGGCGACCTTCGCGGCGAGCGGGCGGGGCGAGG
GGGTGGCGACCGGCGAGCATGCTGCACTCACACACTACGGAGCGCATATTTCCCCTCCTC
GACCTCCCAACACTGCCTCCAGGCTCCAGCCCTCCACCATTGCAACTCGCATACCTCTCC
TCTTCCTCATCAACTTCCGCCGAAGCTTGGACGACCCCGACCTCCCTCCCCACCGTGACA
TTGGGCTACGGCCGGTCATACCACCACGGCTGCGGGCATGGCGGAAGGTCCGTTG

Homology of Contig U35_43927 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None