barSeed - Barley Seed Development Database

Probe CUST_38288_PI390587928

Source Contig U35_14141

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38288_PI390587928	Hv_44K_v2	GAGGATCATTTGTATGTGCTATGTCATATATGCATGCTAGTGCCTGTATGTGGATCAATT	1067	GeneList: cyan MasterList: Pathogenesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	14.690	18.907	1.559	0.744	0.886	0.789
Raw	113.374	158.463	16.769	11.854	3.455	3.355

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371265	921	2e-24	835 - 894	100	60 / 60	plus	ABC02787 ABC02788 ABC02789 ABC02790 ABC49421
MLOC	MLOC_75397.1	767	2e-24	556 - 615	100	60 / 60	plus	ABC02787 ABC02788 ABC02789 ABC02790 ABC49421
JLOC1	JLOC1_50300.1	740	8e-25	557 - 616	100	60 / 60	plus
Harvest21	ABC02787	937	3e-25	834 - 893	100	60 / 60	plus	ABC02787
Harvest35	U35_14141	1171	3e-25	1068 - 1127	100	60 / 60	plus

Contig Sequence (1171 bp)

>U35_14141 1171 Hv_44K_v2
TTTGTTTCGGTGTATAATAACCAAGTAACTGTGTGTGTTTACGTAAAAAAAAAAAAAAAA
AAAAAAAAACTCGAGACTAGTTCTCTCTCCCTCAAGGACAGCAGCCGGCACGACGAGTTC
GAGATCTCCGAGTTCCTGCGCCGCTTCGGGTGGATCGTGCCGGCCTACACCATGCCCCCC
GACGCGCAGCACGTCACGGTGCTCCGCGTCGTCGTCCGGGAGGACTTCAGCCGCACCTTC
GCCGAGCGCCTCGTCATCGACATCGAGAAGGTGCTCCACGAGCTCGACGCGCTCCCCTCG
CGCAGCAGCGGGCCGTCCCTGCAGCACCCCAACGGCGACACGGTGAGCGAGAAGGACCTG
GCGAGGCAGCGCGAGGTGGTGTCCGTCTGGAAGAGGGCCGTCGCCGCCAGGAAGAAGACC
CAGGGCGTCTGCTGAGCAGAGCTGAGGCGGTTCACCTCGCCTGCTGTCCGTGATGATTTT
ATTTCCGTAATAATTTTATGCTATGCTTCTCTTGTCCGTGACGGTTTTTAAGGGGCGGGA
TTAATAGTTCTTCTAGCTCCGTTATTGGATCCATCGAGTATTTTCATGTATGTGTTGAAC
AACAGTAAAGTACTTGCATATTTGTGCCCAAAAAAAAAAAAAAAAAAAAAAAAANANCTC
GAACTAGTTCTCCTTCTTCGACCTGTCCGTCATCGACGGGTTCAACGTGCCGATGAGCTT
CGAGCCCGTGGGAGGGTGCCGTGCTGCGCGGTGCGCCACGGACATCACCAAGGATTGCCT
CAAGGAGCTGCAGGTGCCGGGAGGGTGCGCGAGCGCGTGCGGCAAGTTCGGCGGCGACAC
CTACTGCTGCCGTGGCCAGTTTGAGCACAACTGCCCGCCGACCAACTACTCAATGTTCTT
CAAGGGCAAATGCCCCGACGCCTATAGCTATGCGAAGGACGACCAGACCAGCACCTTCAC
CTGCCCTGCCGGAACCAACTACCAGATCGTCCTCTGCCCTTAGATCAATATCAGTCAATT
ACTTGGGTCAATAAGGAATAAGGACTACTCTTAGTCTGCTTATGATCGAGGATCATTTGT
ATGTGCTATGTCATATATGCATGCTAGTGCCTGTATGTGGATCAATTATAAATAAATGGT
TAAATAATATGAGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_14141 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g43490.1	259	4e-57	protein\|thaumatin, putative, expressed
Brachypodium v1_2	Bradi4g05440.1	228	6e-68
Arabidopsis v10	None