barSeed - Barley Seed Development Database

Probe CUST_38287_PI390587928

Source Contig U35_14142

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38287_PI390587928	Hv_44K_v2	AAGACTTGAGCTGTTGCGCTGCAATGATAGCAAGTACTACTACAATTTTCTGTTAAAAAA	1662	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63275.2	2140	7e-23	9 - 65	100	57 / 57	minus	ABC01373 ABC01385 ABC17092
MLOC	MLOC_63275.1	1965	7e-23	20 - 76	100	57 / 57	minus	ABC01373 ABC01385 ABC17092
JLOC1	JLOC1_41435.1	2280	4e-23	2057 - 2113	100	57 / 57	plus
Harvest21	ABC01373	1809	1e-23	1663 - 1719	100	57 / 57	plus	ABC01373
Harvest35	U35_14142	1733	3e-25	1663 - 1722	100	60 / 60	plus
Harvest35	U35_41681	584	1e-23	91 - 147	100	57 / 57	minus

Contig Sequence (1733 bp)

>U35_14142 1733 Hv_44K_v2
GCAAGCAGTTCCAGAGCCAAGAGCGAGTAGCAGCCAGCCATGGTGCTCTCCAGGGCCGCC
TCGGACACCGACGTGTCTGTTCACTCCACCTTCGCCTCCCGCTATGTCCGGTCGTCCCTC
CCGAGGTACCGCATGCCGGAGAACTCGATCCCCAAGGAGGCGGCGTACCAGATCATCAAC
GACGAGCTGATGCTGGACGGCAACCCGCGGCTGAACCTGGCGTCGTTCGTGACCACGTGG
ATGGAGCCCGAGTGCGACAAGCTCATCATGGCCTCCATCAACAAGAACTACGTCGACATG
GACGAGTACCCGGTCACCACCGAGCTCCAGAACCGGTGCGTGAACATGATCGCGCATCTC
TTCCACGCGCCGCTGGGCGAGTCGGAGACGGCCGTGGGCGTGGGCACGGTGGGGTCGTCG
GAGGCCATCATGCTGGCCGGGCTGGCCTTCAAGCGGAGGTGGCAGAACAAGCGCAAGGCA
GAGGGGAAACCGTTCGACAAGCCCAACATCATCACCGGCGCCAACGTCCAGGTCTGCTGG
GAGAAGTTCGCGAGGTACTTTGAGGTGGAGCTCAAGGAGGTGAAGCTGCGGGAGGGGTAC
TACGTGATGGACCCGGAGCAGGCGGTGGAGATGGTGGACGAGAACACCATCTGCGTGGCG
GCCATCCTCGGCTCCACGCTCAACGGCGAGTTCGAGGACGTCAAGCGCATCAACGACCTG
CTCGAAGACAAGAACAAGCAGACAGGGTGGGAGACGCCGATCCATGTGGACGCGGCGAGC
GGCGGGTTCATCGCGCCGTTCCTGTACCCGGAGCTGGAGTGGGACTTCCGGCTGCCGTGG
GTGAAGAGCATCAACGTGAGCGGCCACAAGTACGGCCTCGTCTACCCCGGCATCGGCTGG
TGCGTCTGGCGCAGCAAGGAGGACCTGCCCGACGAGCTCATCTTCCACATCAACTACCTC
GGCACCGACCAGCCCACCTTCACCCTCAACTTCTCCAAGGGCTCCAGCCAGGTGATCGCG
CAGTACTACCAGCTCATCCGCCACGGCTTCGAGGGGTACAGGAACATCATGGAGAACTGC
CAGGAGAACGCCATGGTGGTGAAGGAGGGACTGGAGAAGACGGGGCGCTTCAACATCGTG
TCCAAGGACGAGGGCGTGCCGCTGGTGGCCTTCTCGCTCAAGGACCACAGCCGCCACGAC
GAGTTCGAGATCTCCGACATGCTGCGCCGCTTCGGCTGGATCGTGCCGGCCTACACCATG
CCGGCCGACGCGCAGCACGTCACCGTGCTCCGCGTCGTCATCCGGGAGGAGTTCAGCCGC
ACCCTCGCCGAGCGCCTCGTCATCGACATCGACACCGTCATGGCCCAGCTCGACGTGCTC
CCCTCCAAGCTCACGCCCCCCGCCCTGGGGCTGCTGCCGGCCACGCTGCCCAAGACCGTC
GCCAAGAAGACGGAGCTCGAGACGCAGAAGTCCGTGGCGGCGGCATGGAAGGAGTTTGTG
CTCGCCAAGAAGACCAACGGCGTCTGCTAGTGCAAAATCAACAGCGTCCAAAATCCAAGC
TACCGATCCAATATAGTAGTACTATTATGATTCGAGTAAAACTGCTATTATAGGTTGATT
TATTAGGGGGAGTTTGTAACCAAAATTTTGCTGTGTCTTTTTAAGACTTGAGCTGTTGCG
CTGCAATGATAGCAAGTACTACTACAATTTTCTGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_14142 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g13300.1	493	protein\|glutamate decarboxylase, putative, expressed
Brachypodium v1_2	Bradi1g68807.1	492
Arabidopsis v10	AT5G17330.1	502	\| Symbols: GAD, GAD1 \| glutamate decarboxylase \| chr5:5711141-5714839 FORWARD LENGTH=502