barSeed - Barley Seed Development Database

Probe CUST_38246_PI390587928

Source Contig U35_14159

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38246_PI390587928	Hv_44K_v2	TACCTAGCAGCAGTTCTGTGTTTATTTGGGTTCCCGATATCTAATCAAAATCGATGTTTC	1895	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252731.1	1932	2e-24	1868 - 1927	100	60 / 60	plus	ABC01373 ABC01385 ABC17092
MLOC	MLOC_64541.1	2296	2e-24	2215 - 2274	100	60 / 60	plus	ABC01373 ABC01385 ABC17092
JLOC1	JLOC1_42392.1	2232	8e-25	2159 - 2218	100	60 / 60	plus
Harvest21	ABC01385	1549	3e-25	1464 - 1523	100	60 / 60	plus	ABC01385
Harvest35	U35_14159	1981	3e-25	1896 - 1955	100	60 / 60	plus

Contig Sequence (1981 bp)

>U35_14159 1981 Hv_44K_v2
TCAATTCCTCGAGCACTGTTGGCCTACTGAGCACGGCGCATACAATAGGAAACGCTCCCG
CTTTCCTTGGTAACGCGCTTGACCCTGACCCTCGTGTTTGTTGATCAAGCACGAACCCAG
CAGCATCAGCGCTAGCCAGTACCGCCGGCCCCCATCTCCGATCGGATCGGCCGTCCTCGC
CGCCGGCGAGCGATCAAGATGGTGCTCTCCCACGCCGCGTCGGGAGGGTCGTCCGACGAC
TCGGTGCACTCCACCTTCGCCTCCCGCTACGTCCGCGCCTCCCTGCCAAGGTACCGGATG
CCGGAGAACTCGATCCCCAAGGAAGCGGCGTACCAGATCATCAACGACGAGCTGATGCTG
GACGGGAACCCGCGGCTGAACCTGGCGTCCTTCGTCACCACCTGGATGGAGCCCGAGTGC
AACAAGCTCATGATGGACTCCATCAACAAGAACTACGTCGACATGGACGAGTACCCCGTC
ACCACCGAGCTCCAGAACCGATGCGTGAACATGATCGCGCATCTCTTCAACGCTCCTCTT
GGGGAGACCGAGACGGCCGTGGGGGTGGGCACCGTCGGCTCTTCGGAGGCCATCATGCTC
GCCGGGCTGGCCTTCAAGAGGCGTTGGCAGAACAAGATGAGGGCCGCCGGCAAGCCCTGC
GACAAGCCCAACATCGTCACCGGCGCCAACGTCCAAGTTTGCTGGGAGAAATTCGCGCGC
TACTTCGAGGTGGAGCTCAAGGAAGTGAAGCTGAGCGAGGGGTACTACGTGATGGACCCC
GAGAAGGCCGTTGAGATGGTCGACGAGAACACCATCTGCGTCGCGGCCATCCTCGGCTCC
ACCCTCAACGGCGAGTTTGAGGACGTCAAGATGCTCAACGACCTCCTCGTCAAGAAGAAC
GAGGAGACAGGGTGGGACACGCCGATCCATGTGGACGCGGCGAGCGGCGGGTTCATCGCG
CCGTTCCTGTACCCTGAGCTGGAGTGGGACTTCCGGCTGCCGTTGGTGAAGAGCATCAAC
GTGAGTGGGCACAAGTACGGCCTCGTGTACGCCGGGATCGGGTGGTGCATCTGGAGGAGC
AAGGAGGACCTCCCAGACGAGCTCATCTTCCACATCAACTACCTCGGCGCCGACCAGCCC
ACCTTCACCCTCAACTTCTCCAAGGGTTCCAGCCAGGTTATCGCGCAGTATTACCAGCTG
ATCCGCCTTGGTTTCGAGGGGTACAGGAACATCATGGACAACTGCCAGGAGAACGCGATG
GTGCTCAAGGAGGGGCTGGAGCGCACGGGCCGGTTCAACATCGTGTCCAAGGACCAGGGC
GTCCCGCTGGTGGCCTTCTCCCTCAAGGACAGCAGCCGGCACGACGAGTTCGAGATCTCC
GAGTTCCTGCGCCGCTTCGGGTGGATCGTGCCGGCCTACACCATGCCCCCCGACGCGCAG
CACGTCACGGTGCTCCGCGTCGTCGTCCGGGAGGACTTCAGCCGCACCTTCGCCGAGCGC
CTCGTCATCGACATCGAGAAGGTGCTCCACGAGCTCGACGCGCTCCCCTCGCGCAGCAGC
GGGCCGTCCCTGCAGCACCCCAACGGCGACACGGTGAGCGAGAAGGACCTGGCGAGGCAG
CGCGAGGTGGTGTCCGTCTGGAAGAGGGCCGTCGCCGCCAGGAAGAAGACCCAGGGCGTC
TGCTGAGCAGAGCTGAGGCGGTTCACCTCGCCTGCTGTCCGTGATGATTTTATTTCCGTA
ATAATTTTATGCTATGCTTCTCTTGTCCGTGACGGTTTTTAAGGGGCGGGATTAATAGTT
CTTCTAGCTCCGTTATTGGATCCATCGAGTATTTTCATGTATGTGTTGAACAACAGTAAA
GTACTTGCATATTTGTGCACAAACACTAGAGTACGTACCTAGCAGCAGTTCTGTGTTTAT
TTGGGTTCCCGATATCTAATCAAAATCGATGTTTCCACAAAAAAAAAAAAAAAAAAAAAA
A

Homology of Contig U35_14159 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g51080.1	493	protein\|glutamate decarboxylase, putative, expressed
Brachypodium v1_2	Bradi1g10480.1	498
Arabidopsis v10	AT5G17330.1	502	\| Symbols: GAD, GAD1 \| glutamate decarboxylase \| chr5:5711141-5714839 FORWARD LENGTH=502