barSeed - Barley Seed Development Database

Probe CUST_38222_PI390587928

Source Contig U35_38118

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38222_PI390587928	Hv_44K_v2	CCACCGTAGATCTTTCTGTAATAACTTGATGACAACTTCGTAGCTTAAGTCCATCTTTTA	72	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.147	1.175	1.048	1.118	0.512	0.498
Raw	4501.033	7307.327	5639.910	9447.053	1535.147	1622.890

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355696	3670	2e-24	3551 - 3610	100	60 / 60	plus	ABC02318 ABC13844 ABC17852 ABC33956 ABC41122 ABC44374 ABC44969
MLOC	AK371218	760	2e-24	636 - 695	100	60 / 60	plus	ABC33956 ABC44374
MLOC	MLOC_61892.1	848	2e-24	229 - 288	100	60 / 60	plus	ABC33956 ABC44374
JLOC1	JLOC1_40468.1	502	8e-25	229 - 288	100	60 / 60	plus
Harvest21	ABC49487	583	3e-25	53 - 112	100	60 / 60	minus
Harvest21	ABC44374	519	3e-25	82 - 141	100	60 / 60	minus	ABC44374
Harvest21	ABC33956	714	3e-25	73 - 132	100	60 / 60	minus	ABC33956
Harvest21	ABC02317	1255	3e-25	1113 - 1172	100	60 / 60	plus
Harvest21	ABC02316	2451	3e-25	2285 - 2344	100	60 / 60	plus
Harvest35	U35_47919	583	3e-25	53 - 112	100	60 / 60	minus
Harvest35	U35_38118	714	3e-25	73 - 132	100	60 / 60	minus
Harvest35	U35_14840	2451	3e-25	2285 - 2344	100	60 / 60	plus

Contig Sequence (714 bp)

>U35_38118 714 Hv_44K_v2
TTTTTTTTTTTTTTTTTAATAATAATAGTAATGAAGATGGTTCAAAAGTATTGCTTTGAC
AGAATATATAGATAAAAGATGGACTTAAGCTACGAAGTTGTCATCAAGTTATTACAGAAA
GATCTACGGTGGACGGCAGCATATCCATCCAGATAAGACATCTTCCAAACCAGCAGAAAA
CAGTTTCTCCGCAGAAAAGCAGTAAGCTCGGTCGCTTGTCCAGTATTGTGGTCGTGATTG
AGACACAACCAAGTTCCGGCTTCTCAAAAGTTGCTGTCTAAGAGAATGGGTCTTTCATGG
TTGGGTTCAAGCAATTGGAGTTTGCAGGCTTATTGGAAACAGAAGGCATGTCATCAAAAG
TGCTAGGCATTGGTGGAAGCGATCCACTTGCTTCAAAAGTTGATTGAGTAGCACCATCAC
CGTAGTGACTGCCATTAGTTGATTGATCCAATGGGTACTGCAAAAACTGATTGTTTGGCA
CAGACAAATCATAGGAGAAGGTTCCACCAGTCAAATCATAGGAGAAGGTTTCACCAGAAA
AATCATAAGAGAAGGTTTCCCCAGGAGCAAACAGATCATCCAGCTCTATATAATCATCAT
CCATAGCAAATCCAGAGTTTGATTGCTGGAAATCATTTTCAGTAACACCCACGTCGCCAG
CAGGGAAGTTTACATTACACATATCCCCTGACTGGNGCAGTCCTGCTAATTGAT

Homology of Contig U35_38118 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None