barSeed - Barley Seed Development Database

Probe CUST_38213_PI390587928

Source Contig U35_14168

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38213_PI390587928	Hv_44K_v2	GATGGCCTGTCTATGGGTGTATCTACTCTATTATGTGTGTAGTCTGATTTAATGGATTTA	1428	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78511.1	1601	2e-24	1511 - 1570	100	60 / 60	plus	ABC01389 ABC01390 ABC01391
JLOC1	JLOC1_52326.2	1868	8e-25	1233 - 1292	100	60 / 60	plus
JLOC1	JLOC1_52326.1	2140	8e-25	1505 - 1564	100	60 / 60	plus
Harvest21	ABC01391	1518	3e-25	1429 - 1488	100	60 / 60	plus	ABC01391
Harvest35	U35_14168	1523	3e-25	1429 - 1488	100	60 / 60	plus

Contig Sequence (1523 bp)

>U35_14168 1523 Hv_44K_v2
CAACTTTCCAGTGCGTCACCGGCCTCCTTTACATCTCATTCCCACCATCACCGGCCACCA
CCCTCGCCGCTCCCACGCCCTCGCACCGCACCTATATCTCGCCCCTCCTCCTCCCCCCTC
TCCCCACCCACCATTCGCCTGCGCCCTTCGCTTCCTCCCGCCGCCGCCGACTTCCCCAGG
TCTTCTCGCTCCAGATCAGTTAACATAAATGGCTGACGCGGAGGACATTCAGCCCCTTGT
CTGTGACAATGGAACTGGAATGGTCAAGGCTGGCTTCGCCGGAGATGATGCTCCACGTGC
AGTTTTCCCTAGTATTGTTGGCCGTCCACGCCACACTGGTGTCATGGTAGGGATGGGGCA
AAAGGATGCTTATGTTGGTGATGAGGCCCAGTCCAAGAGGGGTATCCTGACTTTGAAATA
CCCCATCGAGCACGGAATCGTAAGCAACTGGGATGACATGGAGAAGATTTGGCATCACAC
CTTCTACAATGAGCTCCGTGTAGCACCTGAAGAGCACCCTGTTCTTCTTACAGAGGCCCC
TCTTAACCCTAAGGCCAACAGGGAGAAGATGACACAGATCATGTTTGAGACATTCAGTGT
CCCTGCCATGTATGTTGCTATTCAAGCCGTCCTTTCTCTATATGCTAGTGGGCGTACCAC
TGGTATTGTCTTGGATTCTGGAGATGGTGTCAGTCACACAGTCCCAATATATGAAGGTTA
TGCCCTTCCACACGCTATCCTACGTCTTGATCTTGCCGGTAGGGATCTCACCGATTCCCT
CATGAAGATCCTGACTGAGAGGGGTTACTCTTTCACAACCACTGCCGAGCGGGAAATTGT
CCGTGACATCAAGGAGAAGCTTGCATATGTTGCCCTCGACTACGAACAGGAGCTTGAGAC
CGCGAAGAGTAGCTCATCAGTTGAGAAGAGCTACGAGCTGCCTGATGGGCAAGTGATCAC
CATAGGCGCAGAGCGCTTCAGATGCCCAGAGGTCCTCTTCCAGCCTTCCATCATCGGTAT
GGAAGCTCCTGGCATCCACGAGACGACCTACAATTCCATCATGAAGTGCGACGTGGACAT
CAGGAAGGACCTGTACGGTAACATTGTCCTCAGTGGTGGGTCTACCATGTTCCCTGGCAT
CGCCGACCGTATGAGCAAGGAGATCACAGCGCTTGCCCCAAGCAGCATGAAGATCAAGGT
CGTTGCTCCACCGGAGAGGAAGTACAGTGTCTGGATCGGAGGGTCTATCCTTGCATCTCT
GAGCACATTCCAGCAGATGTGGATCTCCAGGGCAGAGTACGAAGAGTCTGGTCCAGCTAT
CGTCCACAGGAAGTGCTTCTAGACAGTTGTTGCCAGACCTATTTTCCATGCATACCCTTG
TCTAGTAGCATTATTAGGTGGTGGTTTTGTTGGACACAATGTTGGGCCGATGGCCTGTCT
ATGGGTGTATCTACTCTATTATGTGTGTAGTCTGATTTAATGGATTTATTATTGGATTCT
ACAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14168 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os10g36650.1	378	protein\|actin, putative, expressed
Brachypodium v1_2	Bradi3g30710.2	378
Arabidopsis v10	AT5G09810.1	377	\| Symbols: ACT7 \| actin 7 \| chr5:3052809-3054220 FORWARD LENGTH=377