barSeed - Barley Seed Development Database

Probe CUST_38202_PI390587928

Source Contig U35_26146

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38202_PI390587928	Hv_44K_v2	GGAAATGACACCTGATGCTGATATCATATCCTCAAGATACACAAAGAGTGTTATTAAGTC	780	GeneList: skyblue3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.231	1.111	1.306	0.987	0.625	0.601
Raw	95.815	122.638	138.728	159.538	36.353	38.845

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68937.2	3215	7e-23	1932 - 1991	98	59 / 60	plus	ABC10213 ABC40201
MLOC	MLOC_68937.3	4028	7e-23	2745 - 2804	98	59 / 60	plus	ABC10213 ABC40201
MLOC	MLOC_68937.1	3201	7e-23	1902 - 1961	98	59 / 60	plus	ABC10213 ABC40201
JLOC1	JLOC1_45655.1	3262	4e-23	1939 - 1998	98	59 / 60	plus
Harvest21	ABC25452	840	3e-25	781 - 840	100	60 / 60	plus
Harvest35	U35_26146	840	3e-25	781 - 840	100	60 / 60	plus

Contig Sequence (840 bp)

>U35_26146 840 Hv_44K_v2
GGTTGGTTCCAATAGCGCTGATGATGCTCCACGAAACACCACTTCCACGCAATCAACAGC
TGGATCATCAGCTGCTTCTGTCCCCAGTCGTCCAGTTGGACGTGTTGTTGGTATCATCAA
GAGGAATTGGAACTCGTATTGTGGATCATTGGAGCCAATGCCCATGCCTGCTGGTAGCGG
GGGTGTTGCTCATGCTCTTTTTGTGTCGAAAGATCGAAGAATTCCTAAGATTCGGATCCA
AACTAGGCAACTTGGTAATCTTTTAAATAAAAGGATTATCGTTGCAGTTGATTCATGGGA
TGTCATGTCTCGATACCCATCAGGACACTATGTGCGGACTATAGGAGATATTGGCGATAA
AGAAACAGAAACAGAGGTTGTCCTAATAGAGAATGATATTAACACAAGACCTTTCTCTAC
ACAAGTCCTTGCTTGTTTGCCACCTTTGCCTTGGACATTGTCACCTGAGGATGTGGCTAA
TCCTAATAGGCAAGATTTGCGGCATGTGAGAGTCTTTAGTGTGGATCCACCTGGTTGTAG
GGACATTGATGATGCACTACATTGCACACCGCTTCCAAATGGGAATTTTGAAGTTGGAGT
ACATATTGCTGATGTCACTAATTTTGTCCATCCTGGTACCCCTCTTGACGAGGAGGCCTC
TCAAAGGGCAACTTCTGTTTATCTTGTTGGACAACGAATTGACATGCTACCAAAGCCTCT
AACTGAAGATGTTTGTTCTCTTCGTGCTGATGTTGAGAGGCTGGCGTTCTCCGTCATTTG
GGAAATGACACCTGATGCTGATATCATATCCTCAAGATACACAAAGAGTGTTATTAAGTC

Homology of Contig U35_26146 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g03710.1	920	8e-162	protein\|ribonuclease protein, putative, expressed
Brachypodium v1_2	Bradi1g76480.1	936	5e-178
Arabidopsis v10	AT2G17510.2	1012	2e-138	\| Symbols: EMB2763 \| ribonuclease II family protein \| chr2:7609395-7616242 REVERSE LENGTH=1012