barSeed - Barley Seed Development Database

Probe CUST_38196_PI390587928

Source Contig U35_38122

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38196_PI390587928	Hv_44K_v2	CTTGTAATGTCAGATATGGGCAGCTTTATTTTTGTGCAATCGATTTGAAGTCATCAAGAT	18	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361395	2973	2e-24	2812 - 2871	100	60 / 60	plus	ABC10458 ABC10459 ABC10460
MLOC	AK363145	3565	7e-23	3471 - 3531	98	60 / 61	plus	ABC10458 ABC10459 ABC10460 ABC12425 ABC38132
MLOC	AK248158.1	1834	7e-23	1713 - 1773	98	60 / 61	plus	ABC10458 ABC10459 ABC10460 ABC12425 ABC38132
MLOC	MLOC_76554.3	735	7e-23	498 - 558	98	60 / 61	plus	ABC10458 ABC10459 ABC10460
MLOC	MLOC_76554.2	652	7e-23	428 - 488	98	60 / 61	plus	ABC10458 ABC10459 ABC10460
JLOC1	JLOC1_51046.1	733	4e-23	503 - 563	98	60 / 61	plus
Harvest21	ABC10458	778	3e-25	19 - 78	100	60 / 60	minus	ABC10458
Harvest21	ABC10459	836	1e-23	588 - 648	98	60 / 61	plus	ABC10459
Harvest35	U35_38122	366	3e-25	19 - 78	100	60 / 60	minus
Harvest35	U35_17726	836	1e-23	588 - 648	98	60 / 61	plus

Contig Sequence (366 bp)

>U35_38122 366 Hv_44K_v2
TTTTTTTTTTTTTTTTTAATCTTGATGACTTCAAATCGATTGCACAAAAATAAAGCTGCC
CATATCTGACATTACAAGGTCCTAATATGCAAATATCCAGTGGTAGAAACAAGGGGATCT
TATACTGTCGCCCACTGCTTGGTGCTGGAGCCTTGGAACTTCCATGTCGAAACTCAAGTC
GTTACCTTCTGGACTTGCATGCACGTCTCGCTAACTTGCCAGTTAGCCCCCATTATGCGT
ATAAGCAACGCCTGAAATGAACCCATCCCTGTCATAGACAACCCAACTTCTTACTGAATC
CAATTGAGGTACTATCACTCGACCTGATCTGGCCCTTCTCATTTTGAGAGACTCGGGTGT
GGAAAT

Homology of Contig U35_38122 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None