barSeed - Barley Seed Development Database

Probe CUST_38136_PI390587928

Source Contig U35_28613

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38136_PI390587928	Hv_44K_v2	TACTACGATGAATACAAAGGGGTGATATGTCATGTTGCTATTGTTGATGGTGCGATGCGT	666	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368045	2750	2e-24	867 - 926	100	60 / 60	plus	ABC15529
MLOC	MLOC_77583.2	1499	2e-24	702 - 761	100	60 / 60	minus	None
MLOC	MLOC_77583.1	1496	2e-24	704 - 763	100	60 / 60	minus	None
JLOC1	JLOC1_51740.2	1397	8e-25	760 - 819	100	60 / 60	plus
JLOC1	JLOC1_51740.1	1364	8e-25	719 - 778	100	60 / 60	plus
Harvest21	ABC27589	729	3e-25	667 - 726	100	60 / 60	plus
Harvest35	U35_28613	729	3e-25	667 - 726	100	60 / 60	plus

Contig Sequence (729 bp)

>U35_28613 729 Hv_44K_v2
GACCGCCCCCGCCCCGGCGTGTCGGCGTCGGAGCTGGGGCAGTACCCGCCGGAGCGGGTC
CGGAACTTCTCCATCATCGCGCACGTCGACCACGGCAAGTCCACGCTCGCCGACCGGCTG
CTGGAGCTCACCGGCACCATCCAGAAGGGCCACGGGGCTCAGTACCTCGACAAGCTGCAG
GTAGAGAAAGAAAGGGGCATCACCGTCAAAGCCCAAACCGCGACTATGTTCTACAAGCAT
ACAGTGGAAACTCCCGAGTCCAATGGGACAGATACTTCAAGCTATTTGCTTAACCTAATT
GATACTCCAGGTCATGTGGATTTCAGCTATGAGGTCTCCAGGTCCCTAGCAGCATGTCAG
GGTGCTCTTTTAGTAGTTGATGCAGCCCAAGGTGTACAGGCACAAACAATTGCAAATTTT
TACCTTGCATTTGAGTCAAACCTTAGCATTATTCCTGTCATTAACAAGATTGATCAGCCT
ACTGCTGATCCAGATAATGTGAAGGCCCAGTTGAAGAGGTTATTTGACATTGATCCAAGT
GAAGCTCTGCTCACTTCTGCCAAAACTGGTCAAGGCCTTAGCCAGGTGTTACCTGCTGTT
ATCGAGCGTATACCTTGCCCACCTGGGAATTGTGATTCACCTGTACGAATGCTGCTCTTA
GATTCGTACTACGATGAATACAAAGGGGTGATATGTCATGTTGCTATTGTTGATGGTGCG
ATGCGTAAG

Homology of Contig U35_28613 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g05250.3	481	5e-146	protein\|GTP-binding protein GUF1, putative, expressed
Brachypodium v1_2	Bradi1g51240.1	668	1e-151
Arabidopsis v10	AT5G39900.1	663	8e-118	Small GTP-binding protein \| chr5:15976719-15978925 REVERSE LENGTH=663