barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_38127_PI390587928Hv_44K_v2TACACTGGTCGATTTCCTGAAGATCCGTTTCGGCAAACTAGACATTCTGGTAAACAACGC228GeneList: None
MasterList: None



Probe Values

This probe has no recorded values for this experiment





Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK35725711363e-22273 - 3319858 / 59plus ABC14123 ABC15204 ABC40642
MLOCMLOC_44772.111553e-21763 - 8199856 / 57minus ABC14123 ABC15204
MLOCMLOC_44772.213213e-21929 - 9859856 / 57minus ABC14123 ABC15204 ABC40642
JLOC1JLOC1_29037.114142e-21385 - 4419856 / 57plus
Harvest21ABC275935323e-25229 - 28810060 / 60plus
Harvest21ABC1412312995e-231011 - 10699858 / 59minusABC14123
Harvest21ABC141246056e-22106 - 1629856 / 57plus
Harvest35U35_286185323e-25229 - 28810060 / 60plus
Harvest35U35_1966412935e-23231 - 2899858 / 59plus
Harvest35U35_196655956e-2296 - 1529856 / 57plus



Contig Sequence (532 bp)

>U35_28618 532 Hv_44K_v2
GGAGGAGCCTCTCCACGGCCGGCCAAACACGAGGATTGCCGTCGTCACCGGCGGCAACAA
GGGGATCGGCTTCGAGGTGTGCCGGCAACTAGGCAGCCATGGCGTCACCGTCGTTCTGAC
GGCCCGGGACGAGACGAGGGGCGCGGAGGCAGTCGAGAAGCTCAGATCGCTGGGGGTCGC
CGACCTCATTTTCCATCAGCTGGACATCACGGACACTTCCAGCATTGCTACACTGGTCGA
TTTCCTGAAGATCCGTTTCGGCAAACTAGACATTCTGGTAAACAACGCCGCGGTCGGTGG
GGTTGAGTACCTCCAAGAACTCGATGCCAGCGAGGAAAAGTTTGCTGGCATGGATTTCGA
CGAGATGCTCGAATGGATGGTGAAGAACGTCCGTGAGCCCATCGACGGTGCAAAGGAAGG
CTTGCAGACAAACTACTACGGCACGAAGCATGTAACCGAGGCCGTGCTGCCTCTGCTTCA
ATCTTCTTCCGACGGAAGAATAGTGAACGTCTCCTCCATATTTGGCCTGCTG



Homology of Contig U35_28618 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os04g44980.13105e-76protein|short-chain dehydrogenase/reductase, putative, expressed
Brachypodium v1_2Bradi5g16621.13132e-80
Arabidopsis v10None