barSeed - Barley Seed Development Database

Probe CUST_38085_PI390587928

Source Contig U35_22564

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38085_PI390587928	Hv_44K_v2	CAAGCTACTGTATTTCATTATCAGTTTGTCAATATAGCGAGGCCTGACATGTTTAGACAA	418	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366425	1689	2e-24	1503 - 1562	100	60 / 60	plus	ABC12214 ABC47567
MLOC	MLOC_67334.1	3942	2e-24	1495 - 1554	100	60 / 60	plus	ABC12214 ABC47567
MLOC	MLOC_67334.2	3753	2e-24	1467 - 1526	100	60 / 60	plus	ABC12214 ABC47567
MLOC	MLOC_67333.1	1498	2e-24	904 - 963	100	60 / 60	plus	ABC12214 ABC47567
JLOC1	JLOC1_44448.1	2586	8e-25	2233 - 2292	100	60 / 60	minus
JLOC1	JLOC1_44447.1	1842	8e-25	904 - 963	100	60 / 60	plus
Harvest21	ABC12214	649	3e-25	112 - 171	100	60 / 60	minus	ABC12214
Harvest35	U35_22564	493	3e-25	419 - 478	100	60 / 60	plus

Contig Sequence (493 bp)

>U35_22564 493 Hv_44K_v2
ATTTTCACCAGACTGCATACATTCTTGCTACTAGACTCGCTGTGACTGATATCACCCTGC
AAAGATAGATCACTGGTCTATTGAGCTTGCCTCCCCTGTCCTGATGATGTGCTTCCATTT
ATCTCCTGCAGGAAGAGCTTCTGCGAAGATGGCGCATTGGGGATATCACAATGCGCTTTC
ACGCCACCAACCTCTGACGGGAAGGAGCTAGCGTCAAGCTGCTACAAGACCAGTGCATTC
TTAGTCTACAGGAATGGAGATGTATAGAGAGGTCCTCCCAAAATTGGAAAGCAAGTGTTA
AACAGCTGCAAAAGTCAGTCATGTTGAGTACTTGACACATAAACAGGGCACATTCTGCTC
TTATAGTGCCGAGGTCGTCATGTTTTCTTCCGTCGGCAAAGATAGCCGAATGCTGTTACA
AGCTACTGTATTTCATTATCAGTTTGTCAATATAGCGAGGCCTGACATGTTTAGACAAAA
AAAAAAAAAAAAA

Homology of Contig U35_22564 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None