barSeed - Barley Seed Development Database

Probe CUST_38047_PI390587928

Source Contig U35_22577

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38047_PI390587928	Hv_44K_v2	AGTTGGAGCTAGTAAGGCGTGATGCCAGTAAACAAGGAGGATTCTCGCTGATATTTGTAC	757	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252395.1	1157	2e-24	765 - 824	100	60 / 60	plus	ABC17095
MLOC	MLOC_18649.4	299	3e-22	243 - 298	100	56 / 56	minus	ABC17095
MLOC	MLOC_18649.3	620	3e-22	414 - 469	100	56 / 56	minus	ABC17095
MLOC	MLOC_18649.1	1601	3e-22	1406 - 1461	100	56 / 56	minus	ABC12393 ABC17095
JLOC1	JLOC1_12904.1	1155	1e-22	232 - 287	100	56 / 56	plus
JLOC1	JLOC1_12902.1	1623	1e-22	1406 - 1461	100	56 / 56	minus
Harvest21	ABC17095	1118	3e-25	302 - 361	100	60 / 60	minus	ABC17095
Harvest35	U35_22577	1118	3e-25	758 - 817	100	60 / 60	plus

Contig Sequence (1118 bp)

>U35_22577 1118 Hv_44K_v2
GCCTTTCCCACCACTCCCCCTTCCTCCGCGGGCACAGCAGCCATGGCCGCCTCCAGCGAC
CTCCTCGACGTCGACCCGCCGGAGCTCCAGTTCCCCTTCGAGCTCGACAAGCAGATCTCC
TGCCCCCTCAAGATGACCAACAAGACCGACAGGACCGTCGCCTTTAAGGTTAAGACGACG
AGCCCCAAGAAGTACTGCGTGCGCCCCAACAATGGCGTCGTGCGGCCGCGGTCCACCTGC
CAAGTTGTAGTGACGATGCAGGCCCAGACTGTTGCACCACCGGACCTGCAGTGCAAGGAC
AAATTCCTGGTGCAAAGCGTGGTCGTCGCCGATGGCTTATCGGCCAAGGACATCACCCCT
CAAATGTTCATGAAACAAGAGGGTAACATTGTTGAGGAGGTGAGGATGAGGGTCACTTAT
GTGATGCCACCCGAATCGCCGTCGGAGATTGCGGAGGAAAGCGATGGGCCACAGCGAATC
TTGGCGCCTATGCAGAGAATTGCGGATCATGGGAGGAGCGCATCGGAGCTGTCGAGTGGC
TCGGTGTCCTTGAGATCAGCTGACCTGGGGACAGAGGTGGGGTCACCTACTGGACCAGCT
GTAAGGACTGAAGAATTACTGAGGGCTGCAGGACATGCTGTTGAAACAAGAACACATACA
GGCCCTGAAGCACAGCCCCTTGAGCTGTTGGCTTTAATTACAAAATTGACGAAGGAAAAG
GATTCTGCCCTTGAGCAAAATAAAAAGCTTCGCAGTGAGTTGGAGCTAGTAAGGCGTGAT
GCCAGTAAACAAGGAGGATTCTCGCTGATATTTGTACTGGTGTGTGGGCTGCTTAGCATC
ATTCTGGGCTATCTTGTAAAGAAATGAAGATTTCAGCTTCAAGTCCAGTCTATTGATTTA
ATTCCTACAGTAAATAAAAGGTAACATCTCATGGTGTCTGTCGTCGGCCAGCTACCAAGA
TTACAGGGAACAGTTTTTGTTTGTTGTCTTATTTCCCCTTTTTGAAACTTCAGATCAGAC
CAAGCTTGGTGAAGTTTGCAAATGTCCAAAGGATGGGACATGTCCTGTGGAGTGGCATCT
AATTTGATTACATAATGTTTTTAACTAATCATATAAAC

Homology of Contig U35_22577 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g36350.1	276	7e-110	protein\|MSP domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g30380.1	275	2e-131
Arabidopsis v10	None