barSeed - Barley Seed Development Database

Probe ABC12393

Source Contig ABC12393

barSeed

Links

Affymetrix Source Sequence (1241 bp)

>ABC12393 1241
CTGCAATCCCCAATCTCCCAGTCGCCGGAGCACCCGACCGATCCAACAGCCTCGGTCGTC
GGCGAGGAACCTGCTCCGGTAGGCGGAGATGGGCGGGCACGGTGGTCTCAACATCCTGCC
GCAGAAGCGGTGGAACGTCTACAGGTTCGACAACCAGGAGAAGGTCCGCGTCGACGAAGC
CGAGGCCGCCCGCCAGGACCAGCTCCAGCGCGAGGCCACCCGCCGCCGCGAGTCCCACGC
CCGCCTCGTCGCGCTCCGCCGCAACCGGGGCCTCCAGGCCGACTCGCCCTCCCCTCCCCG
TGCCCCATCTCCGCCCCCCTCCTCCGCCCGGCCCGCGCATCAGGTCGCCCCACGGCGGTC
CCCACCCCCTGCCGCCCGGCCCGCGGAACCATCCCCCGTCGCCTCTGACGGAGACCACAT
CAACCTCTTCTCCGGCGGCGGTGGGGCCGCTGACTTCGCCGCGCTTGCCTCCGCTAGCGG
CGGGAGGGGCGCGGCTCGGGAGAGGGAGCCTGCGGCGGACACCAAGCCAAACCCTAAGAA
GCGTAAGAAGGAGGAGGAGGTTAGGACGGCGGGGCCTGACGACGAGAAGTACAAGCTGGG
TTATGGCCTTGCCGGGAAGGGCGTGGCGGCGCCCTGGTACATGTCGAAGCCTTTGGCTTC
CTCCTCCAAGGAGAGGAGAGATTACGCCGAAGGCACGGGAGAGAAGAGGAGTGGAGGGAA
GAAGAGTATCGAGGAGCTTAGAGAGGAGAGGAGGAAGAGGGAGGCCAAGGAGAAGGAGCG
TGAGCGAGCCTTGCTTGCCCCTACAGCAAGGAAGGAGAGGCAGCCGGATCGTGGGTACTC
GTCGAGGTATGTGCGTCGATGATGCAAGGGTCTGTGTGAAATTATCTGCAGGATCTGCAA
TGGATGTTTATTGGAGAAAACCGAAGATGGGCGTCAAAACTTGCATGAAAATACTTTGAA
AGATTGATGTGGAGGCAAAGAGCCATGTTGCTCTGGTGAACTTTCAAGCAGTTCAAGAAC
ATCTCAGTCAATATGAAGATTCGTTAGAGATTAGTTTGTGTATTATTATTATTATGCTCC
TTCTGTAAGATAAACAAGTGCATTAGTGCAGCGTGCAATCACGCCCCTCCGTTCTTGTAA
ATTTTATCAACTCTTACCTGGTGTACACAATTGTTTGGGTTACGAACTGCAATATTGTAA
AATAAACGCTCCAAGTCCTGCTGCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_18649.1	1601	0.0	1 - 922	99	922 / 923	CUST_10577_PI390587928 CUST_38047_PI390587928	ABC12393 ABC17095
MLOC_18649.2	720	0.0	1 - 595	100	595 / 595	None	ABC12393
MLOC_38557.5	3202	1e-124	1 - 243	100	243 / 243	CUST_29773_PI390587928 CUST_10864_PI390587928	ABC03602 ABC12393
MLOC_38557.1	2904	1e-124	1 - 243	100	243 / 243	CUST_29773_PI390587928	ABC03602 ABC12393
MLOC_38557.2	2905	1e-124	1 - 243	100	243 / 243	CUST_29773_PI390587928	ABC03602 ABC12393
MLOC_38557.3	3067	1e-124	1 - 243	100	243 / 243	CUST_29773_PI390587928 CUST_10864_PI390587928	ABC03602 ABC12393
MLOC_38557.4	3057	1e-124	1 - 243	100	243 / 243	CUST_29773_PI390587928 CUST_10864_PI390587928	ABC03602 ABC12393
MLOC_38557.6	3192	1e-124	1 - 243	100	243 / 243	CUST_29773_PI390587928 CUST_10864_PI390587928	ABC03602 ABC12393
MLOC_38557.7	2339	6e-122	1 - 238	100	238 / 238	CUST_29773_PI390587928	ABC12393
MLOC_38557.8	3058	2e-121	1 - 237	100	237 / 237	CUST_29773_PI390587928 CUST_10864_PI390587928	ABC03602 ABC12393