barSeed - Barley Seed Development Database

Probe CUST_37919_PI390587928

Source Contig U35_1975

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37919_PI390587928	Hv_44K_v2	GTTGGTCTTTGTTACACCAGTTCTGTTATTGTTAGGCTAAGACATTTGGGAACTTTTATC	1257	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368339	1304	2e-24	1245 - 1304	100	60 / 60	plus	ABC06099 ABC06101
JLOC1	JLOC1_1385.1	1048	8e-25	925 - 984	100	60 / 60	plus
Harvest21	ABC06099	1322	3e-25	1221 - 1280	100	60 / 60	plus	ABC06099
Harvest35	U35_1975	1373	3e-25	1258 - 1317	100	60 / 60	plus

Contig Sequence (1373 bp)

>U35_1975 1373 Hv_44K_v2
GCCTCGTGGACCCCGCACTCCCGCCTCTCCCCAATCCTAGGGTTTCTCAATCCGCCCCTC
CCTCACACCCCCCGCCGCCGCCACCGCCGCCGCCGCCGCCGTTCGCCGCACCCCGTAGGG
TTTCTCGATCCGGCCCTCCCTCTCGCCCCCCGCTCCCGCAGCTGCCCGCCGCCCGCCCGC
GAAGATGTTGGAGCTGAGGCTGGTGCAGGGGAGCCTGCTGAAGAAGGTGCTGGAGGCGAT
CAAGGAGCTGGTGACGGACGCCAACTTCGACTGCTCCGGGACGGGCTTCTCGCTGCAGGC
CATGGACTCGTCCCACGTCGCGCTCGTCGCCCTGCTCCTCCGCTCCGAGGGCTTCGAGCA
CTACCGCTGCGACCGCAACCTCTCCATGGGCATGAACCTCGGCAACATGGCCAAGATGCT
CCGCTGCGCGGGCAACGACGACATCATCACCATCAAGGCCGACGACGGCTCCGACACCGT
CACCTTCATGTTCGAGTCACCCAATCAGGATAAGATTGCCGACTTCGAGATGAAGCTCAT
GGACATCGACAGCGAGCACCTCGGGATCCCCGACTCCGAGTACCAGGCCATCGTTCGCAT
GCCCTCCTCGGAGTTCTCCAGGATCTGCAAGGATCTTAGCAGCATCGGCGACACTGTTAT
TATCTCTGTCACCAAGGAGGGTGTCAAGTTCTCCACTGCTGGAGATATTGGAACTGCAAA
CATTGTTTGCAGGCAGAACAAGACCGTTGACAAGCCTGAGGAATCTACCATTATAGAAAT
GCAAGAGCCAGTGTCTCTTACCTTTGCTCTGAGGTACATGAACTCCTTCACCAAGGCAAG
CCCACTGTCAGACCAAGTCACCATCAGCCTCTCATCTGAGCTGCCAGTTGTGGTTGAGTA
CAAGATAGGCGAGATGGGCTACATTAGGTTTTATTTGGCACCGAAGATTGAAGAGGATGA
GGAAATGAAGGCATGATTGTGTTTCCAGGATATGCTTATGTTGCCTACATTAGGATTTAT
CTGGCACCCAAGATCGAAGAGGACAAGGAAATGAAGGCATGCTTGTGTTTCAAGGAGATG
CTGATGTTGCCTCCATTCCCTAGTTATTAAACCAACCTCCATTTGCTTAATGATTGTTTG
TAAGCAAAAAAATGGTGGTGTTATGCTTGTTTTAGCTACTTCTGTATCTGTGACTATTGG
TGGTCCATGGATTTCCATCGATGAATGTTGCTGTTTTAGCTACTTGTATCTGTGACTGTT
GGTCTTTGTTACACCAGTTCTGTTATTGTTAGGCTAAGACATTTGGGAACTTTTATCATA
AAATTCTACTGATTGGTCTCTTAAAAAAAAAAAAAAAAAAAGCTCGAGGGGGG

Homology of Contig U35_1975 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g56130.1	264	5e-178	protein\|PCNA - Putative DNA replicative polymerase clamp, expressed
Brachypodium v1_2	Bradi3g54630.1	264	8e-179
Arabidopsis v10	AT2G29570.1	264	2e-163	\| Symbols: PCNA2, ATPCNA2 \| proliferating cell nuclear antigen 2 \| chr2:12650139-12651598 REVERSE LENGTH=264