barSeed - Barley Seed Development Database

Probe CUST_37880_PI390587928

Source Contig U35_1996

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37880_PI390587928	Hv_44K_v2	TTAAAAAAGGCTTGATATGGAAAGTGGGCAATGGGAACAACATCTATATGGCGTGATGCA	1755	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63331.3	2381	2e-24	1659 - 1718	100	60 / 60	plus	ABC05553 ABC05554 ABC37826
JLOC1	JLOC1_41466.2	5383	8e-25	3985 - 4044	100	60 / 60	plus
JLOC1	JLOC1_41466.1	2620	8e-25	1302 - 1361	100	60 / 60	plus
Harvest21	ABC37793	628	3e-25	538 - 597	100	60 / 60	plus
Harvest35	U35_1996	1846	3e-25	1756 - 1815	100	60 / 60	plus

Contig Sequence (1846 bp)

>U35_1996 1846 Hv_44K_v2
ACCCCAAAGCCGTTCACGTGCACGCTCGTCCTTCCGGCGCCCAACGGAACGGCAGCAGCC
GAGCACCGGCATAAATACCTCCCGGCCTCCCCGCCCCCGTGTCCACCGCACACACAACCC
ACACCCACACCTAGCTAGCTTCACGAGGAGGGAGGGAGAGAGAGAGAGAGCTAGCAGAGA
CATGGCGGCAGCTGAGGCTCAGGGCGGTGGGGCGGCGGCGGCGGGGGAGGAGGAGGGGGC
GATCAGGCACAGGACGGTGACGGCGAACGGGATCGCGATGCACGTGGCGGAGTCGGGGCC
GGAGTCGGGGCGGGCGGTGCTGTTCCTGCACGGCTTCCCGGAGCTGTGGTACTCGTGGCG
GCACCAGATGGCGCACCTCGCCGCGCGGGGCTACCGGTGCGTGGCGCCCGACCTCCGCGG
CTACGGCGGCACGGAGGCGCCGGCCGACGTCGCGTCCTACACCGCCTTCCACGTCGTCGG
CGACGCCGTCGCGCTGCTCGACGCCCTCGCCATCCACAAGGTGTTCGTGGTGGGTCACGA
CTGGGGCGCCATCATCGCGTGGTACCTGTGCCTCTTCCGGCCGGACCGGGTGACGGCGCT
CGTCAACACCAGCGTCGCCTTCATGCGCCACGTCTTCATCCGCGCCGGCGCCGGCGCCGT
CAAGACCACCGACTACTTCAACCAAGCCTACGGCCCGACCTACTACATCTGCCGCTTCCA
GGAGCCCGGGGTGGCGGAGAAGGAGTTCGCGCCGGCGCACGCGAGGCACCTCATGACGCG
CATCCTGAGCGACCGCTTCAGCGAGCGCGCGGCCGGCAAGGAGACGACGGAGGACGCCAC
CGTCGAGGCGGCGGCGCTCCCGGCGTGGCTCACGGAGGCGGACATCGACTACTTCGCGGC
GGCGTTCGAGAAGACGGGCTTCACGGGCGCCATCAACTACTACCGCAACATGGACCGGAA
CTGGGAGCTGGCGGCGCCGTGGGCGGACGCCAAGGTGACGGTGCCGACCAAGTTCATCGT
GGGGGACGGCGACCTGACGTACCACTACGCCGGGATCCAGGACTACCTGCACAAGGGCGG
GCTCAAGGCCGACGTGCCGCTGCTGGAGGAGCTGGTCGTCGTCCCCGGCGCCGGCCACTT
CATCCAGCAGGAGCGGGCGCAGGAGGTCAGCAACCACATCTACGACTTCATCTCCAAGTT
CTGAACAACATCTGAGAAGGAAAAAAAAAAAAAAAAACCAGCCGTGCGTCACGTTTTCGG
TAGACCAGTTTGATCATCGTTCGACGCGTGTTATCGTTTCCTACTTTCATTTGTTGCTCA
AATCGACCTCTCAGTTCATCTCATCAGTTGCCGTGGATAATAATCGCTCTGCTCGATCGA
CGGAGCTGTGTCTGTGTATGCCCATGTGTATTTCACGTCAGAATTCTTCTAAGACTGGTT
AAGTGGTTCAGTGGGGTGAAAAAAAAAAAAAAAAACCTGGTGGAGGTTTTAATCCTGAGT
CCCTTCCAATGTTTATTATGGGAGTCTTTAAACTTCCCTTCTTGATTTGTGATGATCTTA
CAGAGATGGTTAGGAAGTACTATTGGGGAGCTTCGAAAGACAAGAGGAAGGTACATTGGA
AATCTTGGTAAAAACTTCAGCAGACAAAGAGCAAAGGTGGTGCAAGCGACTCTTGACAAG
ACCTGAAAGTCTATGTACAAGGCTGCCGAAGAGTAAATATTACCCTAATGGTAGGTTGGA
AGACACTTGATCTGCTTAAAAAAGGCTTGATATGGAAAGTGGGCAATGGGAACAACATCT
ATATGGCGTGATGCATGGATCCCCAGACCCTTCTCGTATAGGCCTA

Homology of Contig U35_1996 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g61360.1	339	1e-166	protein\|hydrolase, alpha/beta fold family domain containing protein, expressed
Brachypodium v1_2	Bradi1g03110.1	336	3e-164
Arabidopsis v10	AT4G02340.1	324	1e-98	alpha/beta-Hydrolases superfamily protein \| chr4:1035722-1037403 FORWARD LENGTH=324