barSeed - Barley Seed Development Database

Probe CUST_37824_PI390587928

Source Contig U35_46600

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37824_PI390587928	Hv_44K_v2	AACTGCTGCAGAGATCGATCAAGCTTTATACAGAGCTGCTAGCTAAGCTGAGGAGTTGAA	21	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_22174.2	2130	7e-23	1913 - 1972	98	59 / 60	minus	ABC18136 ABC18746
MLOC	MLOC_22174.1	2702	7e-23	1954 - 2013	98	59 / 60	minus	ABC18136 ABC18746
JLOC1	JLOC1_15369.1	2612	4e-23	406 - 465	98	59 / 60	plus
Harvest21	ABC46901	623	3e-25	22 - 81	100	60 / 60	plus
Harvest35	U35_46600	623	3e-25	22 - 81	100	60 / 60	plus

Contig Sequence (623 bp)

>U35_46600 623 Hv_44K_v2
CCAGCCACCGATCGCCCTTGCAACTGCTGCAGAGATCGATCAAGCTTTATACAGAGCTGC
TAGCTAAGCTGAGGAGTTGAAGCGTGTGGCCAGCAGGGAAGCTAGCCGCACAATGGGAAT
GAGAATGGGAATGGGTGGCCTCCTGTTGGCCTTCCTCCTGGCCATGCCGGGCCTGACCGC
CGGGCTGACCCGGCGCTACACCTTCAACGTGACGATGGCGACGGTGACGCGGCTGTGCAC
GACCAAGAGCATCCCGACGGTGAACGGGCGGTTCCCGGGGCCGAGGATCACGGTGCGGGA
GGGCGACCGGCTCATCGTCAACGTCCACAACAAGATCAACAACAACGTCACCTTCCACTG
GCACGGGGTGCGGCAGCTGCGGAGCGCCTGGGCGGACGGCCCGGCCTACATCACGCAGTG
CCCCATGCGCCCCGGCCAGAGCTACGTCTACAACTTCCGCGTCGTCGGTCAGCGCGGCAC
CCTCTGGTGGCACGCCCACTTCTCCTGGCTCCGCGCCACCCTCCACGGCCCCCTCGTCAT
CCTCCCGCCCCGCGGCGTCCCCTACCCCTTCCCCAAGCCCTACAGAGAGGTGCCCCTCAT
GCTCGGTGAGTGGTTCAACGCCG

Homology of Contig U35_46600 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g38390.1	514	8e-74	protein\|laccase precursor protein, putative, expressed
Brachypodium v1_2	Bradi2g23370.1	581	6e-91
Arabidopsis v10	AT2G29130.1	573	3e-70	\| Symbols: LAC2, ATLAC2 \| laccase 2 \| chr2:12525189-12527699 REVERSE LENGTH=573