barSeed - Barley Seed Development Database

Probe CUST_37804_PI390587928

Source Contig U35_22655

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37804_PI390587928	Hv_44K_v2	ATGTGGTCTCTTTGGGCAAGGAGGGTTGATTATGTTTGATCTTAGCTCGAACATCCCATC	873	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54762.2	2889	2e-24	1406 - 1465	100	60 / 60	minus	ABC06783 ABC13494 ABC49746
MLOC	MLOC_54762.1	3195	2e-24	1722 - 1781	100	60 / 60	minus	ABC06783 ABC13494 ABC49746
MLOC	MLOC_54762.3	2879	2e-24	1404 - 1463	100	60 / 60	minus	ABC06783 ABC13494 ABC49746
JLOC1	JLOC1_35266.4	3770	8e-25	1419 - 1478	100	60 / 60	plus
JLOC1	JLOC1_35266.3	3770	8e-25	1419 - 1478	100	60 / 60	plus
JLOC1	JLOC1_35266.2	3622	8e-25	1271 - 1330	100	60 / 60	plus
JLOC1	JLOC1_35266.1	3499	8e-25	1148 - 1207	100	60 / 60	plus
Harvest21	ABC24628	936	3e-25	874 - 933	100	60 / 60	plus
Harvest35	U35_22655	936	3e-25	874 - 933	100	60 / 60	plus

Contig Sequence (936 bp)

>U35_22655 936 Hv_44K_v2
GGCCTCGTCCGACGCGCTGCTGCGGTACGACGACGACGGCCCGCGGGAGCCGCTGATGCG
GAAGCGCACCATGAACACCACCTCCCAGATCGCCATCGTCGGCGCCAACGTCTTCGCCAT
CGAGAGCCTCGACTACGAGATTGTGGAGAATGATCTTTTCAAGCAAGACTGGCGATCGAG
AAAGAAGAATCAGATATTTCAGTATGTTGTTCTGAAATGGGCATTAGTTCTTCTTATTGG
CTTGTTGACTGGACTTGTTGGCTTCTTCAACAACCTTGCAGTCGAGAATATTGCTGGATT
CAAATTGGTGCTCACAGGTGATCTTATGCTCCAGAAGAGGTACTTCACAGCATTTCTGGC
ATATGGAGGCTGCAATCTATTCTTAGGAGCCACTGCTGCAGCACTATGCGCTTACATAGC
ACCAGCTGCTGCTGGGTCTGGTATCCCTGAAGTTAAAGCATATCTTAATGGAGTTGATGC
TTACTCTATTTTAGCTCCCAGCACACTCTTTGTGAAGATATTTGGTTCAATACTTGGAGT
TTCAGGTGGATTTGTACTTGGGAAAGAAGGTCCCATGGTGCATACAGGGGCATGCATTGC
CAACTTGCTTGGTCAGGGGGGATCACGCAAGTACCATCTCACATGGAATTGGCTGAAATA
TTTCAAGAATGACAGGGATAGACGAGATTTGATTGCATGTGGTGCAGCAGCTGGAGTGGC
AGCCGCATTTCGTGCACCTGTTGGTGGTGTACTCTTTGCTCTGGAGGAAGCAGCATCATG
GTGGCGAAGTGCTCTTCTATGGAGAACATTCTTTACAACTGCTGTTGTTGCTGTAGTGTT
GAGGGCCCTGATTGAGTTCTGTCGTAAAGGAAAATGTGGTCTCTTTGGGCAAGGAGGGTT
GATTATGTTTGATCTTAGCTCGAACATCCCATCATA

Homology of Contig U35_22655 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	ChrSy.fgenesh.mRNA.37	807	1e-147	protein\|expressed protein
Brachypodium v1_2	Bradi5g11340.1	796	2e-153
Arabidopsis v10	AT5G49890.1	779	4e-120	\| Symbols: CLC-C, ATCLC-C \| chloride channel C \| chr5:20288489-20292143 REVERSE LENGTH=779