barSeed - Barley Seed Development Database

Probe CUST_37716_PI390587928

Source Contig U35_19347

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37716_PI390587928	Hv_44K_v2	TGCCAGATCTGAGGTCAAAGCAGGAGGACAGGACGGACATGCAGGGAGCGCTGGTGGACA	123	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_79317.1	642	2e-24	342 - 401	100	60 / 60	plus	ABC14331
JLOC1	JLOC1_52839.1	609	8e-25	308 - 367	100	60 / 60	plus
Harvest21	ABC14331	606	3e-25	105 - 164	100	60 / 60	plus	ABC14331
Harvest35	U35_19347	631	3e-25	124 - 183	100	60 / 60	plus

Contig Sequence (631 bp)

>U35_19347 631 Hv_44K_v2
CTCCTCCCCCTCTTTCCCTCTCGCCACCACACCCAGTCACCCACGCACCCGCTGCTCGCT
CCCTCGGCTCGGCATCGATCTCTCTCTCCCTCCACGGCAGGCCGGCGTCGTCGATCGCGT
GCTTGCCAGATCTGAGGTCAAAGCAGGAGGACAGGACGGACATGCAGGGAGCGCTGGTGG
ACAGCCCGGGGGCGGCTGAGGCGGCGGTGCGGCCGAGCAGGTACGAGTCGCAGAAGCGCC
GGGACTGGCACACGTTCGGGCAGTACCTGCGCAACCACCGCCCGCCGCTGGAGCTCTCGC
GGTGCAGCGGCGCCCACGTGCTGGAGTTCCTCCGCTACCTCGACCAGTTCGGCAAGACCA
AGGTCCACGCCCCGGGCTGCCCCTTCTTCGGCCACCCTTCCCCGCCGGCGCCGTGCCCGT
GCCCGCTCCGCCAGGCCTGGGGCAGCCTGGACGCGCTCGTCGGCCGCCTGCGCGCCGCCT
TCGAGGAGCACGGCGGGCGGCCCGAGGCCAACCCGTTCGGCGCGCGCGCCGTCCGCCTCT
ACCTCCGCGAGGTGCGCGACTCCCAGGCCAAGGCGCGCGGCATCGCCTACGAGAAGAAGC
GCCGGAAGCGCCCGCCACCGTCGTCGTCCCA

Homology of Contig U35_19347 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g46030.1	278	2e-73	protein\|DUF640 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g04960.1	273	4e-72
Arabidopsis v10	AT3G23290.2	195	2e-64	\| Symbols: LSH4 \| Protein of unknown function (DUF640) \| chr3:8326958-8328010 FORWARD LENGTH=195