barSeed - Barley Seed Development Database

Probe CUST_37673_PI390587928

Source Contig U35_19359

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37673_PI390587928	Hv_44K_v2	GAACTGGAAAGATGAACATACATGATACATTTCCTACAAAGCATGTTTGAGTCCGAGGTT	1601	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366758	2973	2e-24	2795 - 2854	100	60 / 60	plus	ABC06783 ABC13494 ABC49746
MLOC	MLOC_55517.1	3685	2e-24	108 - 167	100	60 / 60	minus	ABC06783 ABC13494
MLOC	MLOC_55517.4	2864	2e-24	96 - 155	100	60 / 60	minus	ABC06783 ABC13494 ABC49746
MLOC	MLOC_55517.6	3701	2e-24	90 - 149	100	60 / 60	minus	ABC06783 ABC13494 ABC49746
MLOC	MLOC_55517.2	3022	2e-24	102 - 161	100	60 / 60	minus	ABC06783 ABC13494
MLOC	MLOC_55517.3	3018	2e-24	102 - 161	100	60 / 60	minus	ABC06783 ABC13494
MLOC	MLOC_55517.5	3201	2e-24	96 - 155	100	60 / 60	minus	ABC06783 ABC13494 ABC49746
MLOC	MLOC_55517.7	3002	2e-24	90 - 149	100	60 / 60	minus	ABC06783 ABC13494
MLOC	MLOC_55517.8	3709	2e-24	77 - 136	100	60 / 60	minus	ABC06783 ABC13494 ABC49746
MLOC	MLOC_55517.9	2786	7e-23	1 - 57	100	57 / 57	minus	ABC06783 ABC13494 ABC49746
JLOC1	JLOC1_35821.16	2989	8e-25	2780 - 2839	100	60 / 60	plus
JLOC1	JLOC1_35821.15	2928	8e-25	2719 - 2778	100	60 / 60	plus
JLOC1	JLOC1_35821.14	3066	8e-25	2857 - 2916	100	60 / 60	plus
JLOC1	JLOC1_35821.13	3071	8e-25	2862 - 2921	100	60 / 60	plus
JLOC1	JLOC1_35821.12	2940	8e-25	2731 - 2790	100	60 / 60	plus
JLOC1	JLOC1_35821.11	2912	8e-25	2703 - 2762	100	60 / 60	plus
JLOC1	JLOC1_35821.10	2901	8e-25	2692 - 2751	100	60 / 60	plus
JLOC1	JLOC1_35821.9	2820	8e-25	2611 - 2670	100	60 / 60	plus
JLOC1	JLOC1_35821.8	3687	8e-25	3478 - 3537	100	60 / 60	plus
JLOC1	JLOC1_35821.7	3761	8e-25	3552 - 3611	100	60 / 60	plus
JLOC1	JLOC1_35821.6	3681	8e-25	3472 - 3531	100	60 / 60	plus
JLOC1	JLOC1_35821.5	3761	8e-25	3552 - 3611	100	60 / 60	plus
JLOC1	JLOC1_35821.4	2967	8e-25	2758 - 2817	100	60 / 60	plus
JLOC1	JLOC1_35821.3	2901	8e-25	2692 - 2751	100	60 / 60	plus
JLOC1	JLOC1_35821.2	2546	8e-25	2337 - 2396	100	60 / 60	plus
JLOC1	JLOC1_35821.1	2384	8e-25	2175 - 2234	100	60 / 60	plus
Harvest21	ABC13494	1621	3e-25	1407 - 1466	100	60 / 60	plus	ABC13494
Harvest35	U35_19359	1812	3e-25	1602 - 1661	100	60 / 60	plus

Contig Sequence (1812 bp)

>U35_19359 1812 Hv_44K_v2
GCAACTTATAGTACTCCGGATCTACTTGCAATAATTATCCTTGGAATAATTGGTGGTATA
TTCGGAGGCCTCTTTAACTTTCTATTGGATAAAATTCTTCGTATTTACAGTATTATCAAT
GAGAGAGGTGCCCCGTCCAAGATCCTTCTCACTATGATAGTATCGGTTATCACATCAATG
TGCTCCTATGGCCTCCCTTGGCTAGCTTCGTGCACACAATGCCCCGTGGATGCCATGGAG
CAATGTCCCACCGTTGGTCGCTCTGGAAACTATAAGAACTTTCAGTGCCCACCGGGGTAT
TACAATGGTATGGCATCACTGTTCTTTAACACAAACGACGATGCCATCCGCAATCTTTTC
AGCACTGGAACTGCGACTGAGTACCATATGTCTAGTCTCTTCATCTTCTTCGTCGCAATT
TATTGCCTTGGCCTTGTAACTTATGGGATTGCTGTCCCATCTGGTCTCTTTATCCCAGTT
ATCCTTGCTGGAGCCACATACGGTCGAATAGTGGGTACGCTTTTGGGATCCATATCAAAT
CTTGACCCTGGACTTTTTGCACTTCTTGGTGCGGCCTCTTTTCTCGGTGGGACAATGAGA
ATGACGGTGTCAGTCTGCGTGATCCTTCTAGAACTCACCAATGATCTGCAAATGCTCCCT
TTGGTCATGCTTGTTCTTCTAATATCGAAGACCATCACGGACAGCTTTAACAAGGGGGTT
TATGACCAGATAGTGGTAATGAAAGGTTTGCCGTACATGGAGGCTCATGCTGAACCGTAC
ATGAGACATTTGGTTGCTGGTGATGTTGTGTCGGGCCCACTAATCACATTTTCAGGTATC
GAGAAGGTAGCGGACATTGTTACTGCGTTGAGGATCACTGGCCACAATGGATTTCCAGTG
GTTGATGAGCCACCTCTAACAGAAGTGCCTGAGTTGGTTGGGCTTGTGATCAGGTCTCAT
CTATTGGTTTTGCTGAAAGGCAAGATGTTTATGAAGGAGCGGGTAAAAACCAGCGGTAGC
TTTGTTATGGAAAGGTTCGGTGCCTTTGACTTTGCTAAGCCGGGGTCAGGGAAGGGTTTG
AAAATTGAGGATCTACATTTCACTGATGAGGAGATGCAAATGTATATTGATCTCCATACG
ATTGCAAACACGTCACCATATACGGTGGTTGAGACAATGTCACTAGCAAAAGCTGCTCTC
CTATTTCGAGAACTAGGATTGAGGCATCTCTTGGTTGTTCCAAAGACTCCATACAGGCCT
CCCATTGTTGGAATTCTCACAAGGCATGATTTTGTGGAGGAGCATATCCACGGCCTATTC
CCAAGTTTCAATCCTCACAACTTCCATTCAACCTCGATGGGAGGTTGACTGTGAAAAGTT
TTGTGTTTCTTCCCATCTACAGAAATCATACAAGTCTTATGTACATCAATTAGATTGCTC
TTGTGTGATAATAATTTGGCCACATGGTTGGACGCCTGCCCAGTGTCAGAAGGTCAAAGA
AGTTCGTGAACTAAAGACAAGGAAGCCGGTGACCCTAGTTGTCTGTTGTAATCATATGAG
AGGAATTACTGTACAACTGTAGAGTAAACATTCAAAGTCTGGAACTGGAAAGATGAACAT
ACATGATACATTTCCTACAAAGCATGTTTGAGTCCGAGGTTTGTGTGTGTGTGTGTGTGC
GCGCGCGTGTGTGTGTTTGCGAAGAGTCTAAGGGTTTAGTTAAGAACTTCTAAAAATATT
TAAACAAGTCTCATTCTCATTTGCAACGTAAAAAAAGAAAAAAAAAATCCGTAGGGAGGG
NCCCGGTACCCA

Homology of Contig U35_19359 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g35190.1	805	0.0	protein\|chloride channel protein, putative, expressed
Brachypodium v1_2	Bradi3g45940.1	809	0.0
Arabidopsis v10	AT5G49890.1	779	2e-174	\| Symbols: CLC-C, ATCLC-C \| chloride channel C \| chr5:20288489-20292143 REVERSE LENGTH=779