barSeed - Barley Seed Development Database

Probe CUST_37608_PI390587928

Source Contig U35_2163

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37608_PI390587928	Hv_44K_v2	GCGTGAGATATCTGCCTAGTCCTATATTTGTATCACTGGTGTTTAAAATATTTATGAACC	2260	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373112	4115	2e-24	4032 - 4091	100	60 / 60	plus	ABC06398
JLOC1	JLOC1_8351.1	3651	8e-25	3327 - 3386	100	60 / 60	plus
Harvest21	ABC06398	2186	3e-25	2086 - 2145	100	60 / 60	plus	ABC06398
Harvest35	U35_2163	2361	3e-25	2261 - 2320	100	60 / 60	plus

Contig Sequence (2361 bp)

>U35_2163 2361 Hv_44K_v2
CATTTATCGAGCCTCTCCCTGTGATTGAGTTTGTTGCTCAGCTTCTGTGCAGAGACATCT
CAGTTAGACCGCTCACTGATTCAGATCGTGTGAAGATTAAGAAAGCCCTACGAGGTGTAA
AGGTTGAGGTTACACATAGAGGAAACATGCGTAGGAAATACCGTATATCTGGCCTCACAT
CACAAGCAACGCGAGAGCTATCATTCCCTGTTGATGATCGCGGTACTGTGAAGACTGTGG
TGCAATACTTCCTGGAGACGTATGGTTTCAATATTCAGCACACCACTTTACCATGCTTGC
AAGTCGGTAATCAGCAAAGGCCAAATTATCTCCCCATGGAGGTTTGTAAAATTGTTGAAG
GACAACGCTACTCAAAACGACTGAATGAAAAACAAATAACTGCTCTACTGAAAGTGACTT
GCCAGCGCCCTCAAGAGCGTGAGAAGGACATCTTGCAGACTGTGCATCACAATGCGTACT
ACGAAGATCCATATGCACAGGAATTTGGCATAAAAATTGATGAGCAACTTGCATCGGTTG
AAGCTCGTGTTCTGCCTCCGCCAAGGCTTAAGTACCATGATAGTGGCAGAGAGAAGGATG
TCTTACCCAGGGTCGGCCAGTGGAACATGATGAACAAGAAAATGGTCAATGGTGGTAGAG
TCAGCCACTGGGCATGTATTAACTTCTCTCGGAATGTGCAAGATAATGCTGCCAAGGTTT
TCTGTCATGAGTTGGCTATAATGTGCCAAATATCTGGAATGAACTTTGCACCTGAACCTG
TGCTGCCCGTACTTAGTGCGAGGCCTGAACACGTGGAAAGAGCTCTGAAGGCACGTTATC
ATGATGCCATGAACGCAAGCAATCCCCCAGGCAAAGAACTTGACCTGCTAATTGTTATAC
TGCCGGATAATAATGGTTCTCTTTATGGGGATCTTAAAAGGATTTGTGAGACTGAACTAG
GATTGGTATCCCAGTGTTGTCTTACAAAACATGTGTTTAAGATGAGCAAGCAGTATCTTG
CAAATGTAGCTCTTAAAATCAATGTTAAGGTCGGGGGAAGGAATACTGTACTCGTGGATG
CTTTGGCAAGGAGGATTCGCCTTGTTACTGACCGACCGACCATAATATTTGGTGCTGATG
TTACACATCCTCACCCTGGAGAAGATTCCAGCCCTTCCATTGCAGCTGTGGTTGCTTCTC
AAGACTGGCCTGAGATAACTAAGTACGCAGGATTAGTGAGTGCCCAAGCCCATAGGCAAG
AGCTGATACAGGATCTTTTTAAAGTATGGCAAGATCCCCAAAGAGGAACTGTGACTGGCG
GCATGATCAAGGAGCTTCTCATATCTTTCAAGAGGGCAACTGGGCAGAAACCTCAGAGAA
TCATATTTTACAGGGATGGTGTCAGCGAGGGACAGTTCTACCAAGTTCTGTTGTTTGAAC
TTGATGCCATTAGGAAGGCCTGTGCATCCTTGGAGCCAAATTATCAGCCTCCAGTTACTT
TTGTGGTTGTCCAGAAGCGTCACCACACTAGGCTTTTTGCTAACAATCACAATGATCAGC
GTACTGTCGATAGAAGCGGGAACATACTGCCTGGCACCGTTGTTGATTCGAAGATCTGCC
ATCCGACAGAATTCGATTTCTACTTGTGTAGCCATGCTGGCATTCAGGGAACAAGCCGGC
CTGCCCACTATCATGTTCTCTGGGACGAGAACAAATTTACTGCTGATGAGTTGCAAACTC
TCACAAACAACCTGTGCTACACGTATGCTCGATGCACCCGCTCTGTATCGATTGTTCCTC
CTGCATACTATGCCCATCTGGCAGCCTTCCGGGCTCGGTTCTACATGGAGCCGGACACCT
CCGACAGCGGGTCCGTGGCGAGCGGTGCACGTGGCGGTCCTCCACAGGGCGGTCCACGCA
GCAGCACCAGGTTTGGGAACGTTGCTGTCAGGCCTCTCCCCGCCCTCAAGGAAAACGTCA
AGCGCGTCATGTTTTACTGCTAAGATCCTCGCAGTTACCGTGAGGTAACTTGAAGCACCT
GTGAGTCGTATTGGTGATGCTGTTCAACACCATTGTGGGAACCTAAACCAAAGTTATCTG
CTGTACTCTGTTTCAACACCATTCTAAGTACCTGCACCGGATTGGTGACTAGTGTGGCCG
GTGCACAAACCTTTTAAGCTATTCGACTGAATTGGGCGTCATTTGTCTGTTGCGTTGCGC
CGGTGCTGCTGCGAGAAGCTTTTGCTTTCATGGCTGTGCCGCGTGAGATATCTGCCTAGT
CCTATATTTGTATCACTGGTGTTTAAAATATTTATGAACCTATGTCAAGGAATCACTTGC
TAGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_2163 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g47870.1	1119	protein\|PINHEAD, putative, expressed
Brachypodium v1_2	Bradi5g18540.1	1095
Arabidopsis v10	AT1G48410.2	1050	\| Symbols: AGO1 \| Stabilizer of iron transporter SufD / Polynucleotidyl transferase \| chr1:17886285-17891892 REVERSE LENGTH=1050