barSeed - Barley Seed Development Database

Probe CUST_37586_PI390587928

Source Contig U35_2186

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37586_PI390587928	Hv_44K_v2	CCAACTTGGAGTTTACCCAAATTTGGGTAAAATTGATTTTAAAATGGGCTATTTTCCTGC	1469	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59226.2	1585	2e-24	1512 - 1571	100	60 / 60	plus	ABC03172 ABC03175
MLOC	MLOC_59226.1	1681	2e-24	1583 - 1642	100	60 / 60	plus	ABC03172 ABC03175
JLOC1	JLOC1_38528.2	1643	8e-25	1522 - 1581	100	60 / 60	plus
JLOC1	JLOC1_38528.1	1753	8e-25	1632 - 1691	100	60 / 60	plus
Harvest35	U35_2186	1552	3e-25	1470 - 1529	100	60 / 60	plus

Contig Sequence (1552 bp)

>U35_2186 1552 Hv_44K_v2
GAGAGAGCGGCTCATCTCAGCTCAGCTCCTTCGCTTCCATCGCTCAAGGCCTCGAGCTCT
CCTCCACCTCCGCCCCCTGGGAATCTCCGAGCTCGTCCACCGCTGGATCGATCGGGTGCA
GAGTTCCATGAAAGAGGCGCGGTTTTGGGAGGCCGTTGCAACCGAAGCCGGGCCGCGTGG
TGTCCCGAGACGGGTCTCGCTGGCGGCGGGGGCTTCCTATTATTCTTCGCCCTTCGGCTG
CTCTATCTTGTTCTAGCTCACGGGTGGGAGCTGGTAGGGAGTTCACGAGAGAATATGGCG
AGGTTTTGCTGCTTCGGCGCTGGCTGCTCCGAGCTGACAGGGCATGCATCGGCCTCCTCT
GGTAAAGGGAAAGGCTGTCAGGGCCAAGTCAAGGTTAGCTACGGGTTTAGCCTTGTAAGA
GGAAAGACAAACCATCCGATGGAGGATTTTCATGTCGCAGAGCTTGCTGAAGTGAAAGGA
AACGAGCTTGGTCTTTTTGCTATTTATGATGGTCATTTAGGTGACACTGTTCCTGCATAC
CTACAGAAAAATTTGTTTCCTAATATTTTGAACGAGGAAGAGTTTTGGACACATCCAGAC
AGAGCAATCACAAAGGCTTATGAAAAGACAGACCAGGCTATTCTGTCACATACTCCAGAT
CTGGGACAAGGTGGCTCCACTGCTGTAACTGCCATCCTTATAAATGGCAGGAAGTTGTGG
GTAGCTAATGTTGGGGATTCACGGGCTGTTCTTCTGAAAGGAGGCGAGGCCATACAGATG
TCAATTGACCATGATCCAAATGCCGAGCGTGGCGCTATTGAAAACAGGGGTGGTTTTGTT
TCAAATATGCCAGGAGATGTTCCTAGAGTCTGTGGTCAGTTGGCCGTGTCCAGAGCTTTT
GGGGACAGGAACCTAAAATCACTTTTGAAATCAGAGCCTGATGTGAAAGTCGAAGATATT
GATCACACTGCTGAGCTAGTTGTCCTTGCAAGCGATGGAGTTTGGAAGGTAATGAACAAC
CGGGAAGCAGTTGATGTGGTGAAAAAATACAAGGACCCACAAACAGCTGCCAAGCAATTA
ATCGCCGAAGCGGTGAAAAGAGACAGTAAAGATGATATATCATGCGTAGTTGTTCGGTTC
AAGATGTAAATTTGTTGCAGGTAACTCGTGAAGAATTGTCACCGAGAGCAGAAGGAATTA
TAACAGCAAAACATCGCCTGCCTGACAAGGATAGTGGTAATGCAAAAGAATAATACTCTG
GAATGCTGGCTGTAAATGATGTGTTAGTTCGATTGTAAGTTGATATATAAATATGCTAGA
ATTCTTTGTTTTGCGATTCCAGGGTACATGCGAGTGGGTCCAGATAGCTTTATTCTGTAA
ATAATGGTTTTCGGATATTCAAAGTTCACGGTGCTCTGTTGTGAGAGTAGCCATTTGGTT
GGTTAAAAAAAAAAAAAAAAATTCATCTTCCAACTTGGAGTTTACCCAAATTTGGGTAAA
ATTGATTTTAAAATGGGCTATTTTCCTGCTTAAAATCAAGGGCAAATAATTG

Homology of Contig U35_2186 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g37904.1	285	3e-166	protein\|protein phosphatase 2C, putative, expressed
Brachypodium v1_2	Bradi5g11980.1	283	2e-169
Arabidopsis v10	AT1G34750.1	282	1e-122	Protein phosphatase 2C family protein \| chr1:12736386-12737727 REVERSE LENGTH=282