barSeed - Barley Seed Development Database

Probe CUST_37567_PI390587928

Source Contig U35_38843

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37567_PI390587928	Hv_44K_v2	AAGGGAAAGGGACATCGGGCCCCATCAGTACCACGCGAGACCCTCGAGCTCAGCTTTGAC	524	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15701.1	2478	2e-24	847 - 906	100	60 / 60	plus	ABC17102 ABC26328 ABC47779
JLOC1	JLOC1_10787.1	2319	8e-25	665 - 724	100	60 / 60	plus
Harvest21	ABC34789	632	3e-25	525 - 584	100	60 / 60	plus
Harvest35	U35_38843	632	3e-25	525 - 584	100	60 / 60	plus

Contig Sequence (632 bp)

>U35_38843 632 Hv_44K_v2
GCACTCGTGTTCGCAACTTCGCACTCATGGATAACTTGCCACTGACCACCATGGCCGGGG
CCGCGGCGTCATCGTTGGAAGGAGGCGGGAAGGTGGTGGACACGTACAAGAAGGCGCTGG
GCACGGCGGCGTCGGTGGCCGCGTACGCCATGCTGGTGCGCAGCATGGCCAGGGAGCTCC
TCCCCGAGGAGCTGCGCGCCGCGGTGCGCTGGGGTGCCGCGTTCGTGCGCACCCGCCTTG
GCGCCGGCGACAAGGAGCGTCACACCATCGTCATCCGCCGCCACTTGGATGCCGGGTACA
ACGAGAACCACCTCTTCGAGGCGGCGCGCGCCTACCTGGCCACCAAGATCGATCCGACCG
CCATGCGCCGGCTCTGCCTCGCGCGCACCCGGTACAAGGAGCCCGACGGGAGCAGCAGCT
GGAGCACACTCCTGTGCATGGACGATGGGGGCTCCACCACCGACGCCTTCGACGGCGTCG
ACTTCAAGTGGACGTCCATCGAGACCGGCGGCGACGAAGGCAAGAAGGGAAAGGGACATC
GGGCCCCATCAGTACCACGCGAGACCCTCGAGCTCAGCTTTGACGCCGAGCACGCGGAGG
CGGCGCTCGAGCGGTACGTGCCGTTCATCATG

Homology of Contig U35_38843 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g38800.1	530	3e-82	protein\|AAA family ATPase, putative, expressed
Brachypodium v1_2	Bradi1g26100.1	529	2e-92
Arabidopsis v10	None