barSeed - Barley Seed Development Database

Probe CUST_37561_PI390587928

Source Contig U35_14890

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37561_PI390587928	Hv_44K_v2	CGTTGCTTTCTTTCTGTAGCCTATAATATGGATCTCATCATCTTTCTTTTTGGTCCGAAA	463	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61997.1	2166	2e-24	2057 - 2116	100	60 / 60	plus	ABC02157 ABC13200
MLOC	MLOC_61997.2	1979	2e-24	1863 - 1922	100	60 / 60	plus	ABC02157 ABC13200
MLOC	AK365841	2431	3e-21	2353 - 2412	97	58 / 60	plus	ABC02157 ABC02455 ABC13200 ABC16177
JLOC1	JLOC1_40554.1	2116	8e-25	1873 - 1932	100	60 / 60	plus
Harvest21	ABC02157	595	3e-25	73 - 132	100	60 / 60	minus	ABC02157
Harvest35	U35_14890	595	3e-25	464 - 523	100	60 / 60	plus

Contig Sequence (595 bp)

>U35_14890 595 Hv_44K_v2
CGCAGTGGCGGACGGGGCCGCTGGGGCCCAAGACGCTGTGCAACGCGTGCGGGGTGCGGT
ACAAGTCGGGGCGGCTGGTGCCGGAGTACCGCCCGGCGGCGAGCCCCACGTTCGTGCTGA
CGCAGCACTCCAACTCCCACCGCAAGGTGATGGAGCTACGCCGGCAGAACGAGCTTGTCC
ACCTCCGCGGCGGCGTGGCCGGGGGCGTCGTGTCGGGGTCGTCCGGCTCCGGCGGCGCGG
CGGAGCACATGTTCCGCGACTACGGCGTGTGCTGACCCGCCGGTTCCAGCAGCCTAGTCT
AGCCTAGCCTAGCCTAGCTAGCGAGCAAGCAAAGCTTGGACCGACCGACCGACCTTCCAT
GGACGATCGATGGATCCGATCAGCACGACGAGGACGACGACGACGATCTGCTTAATTTTG
CATGCAAATTCCTTTTCCTTGCTTTCTTCCGTGTACTATTTCGCGTTGCTTTCTTTCTGT
AGCCTATAATATGGATCTCATCATCTTTCTTTTTGGTCCGAAATAAATAAGGAAATCTGT
TGAAAAAACTCCGGAATAAATTGAAAATGTTCGATTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14890 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None