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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_37552_PI390587928Hv_44K_v2TCAAAGGTCTTCAGGTGGCGATCAAGTGCAAGAACGTCCACGGCGAGTACGAGAGCAAGG150GeneList: None
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.6661.8192.1101.4261.0771.217
Raw 5.92530.30629.31634.5758.01310.372



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK251384.110012e-24210 - 26910060 / 60plus ABC00061 ABC00152 ABC00327 ABC00444 ABC00553 ABC00603 ABC00704 ABC00970
MLOCMLOC_35435.18262e-24485 - 54410060 / 60plus ABC00152 ABC00444 ABC00603 ABC00704 ABC00970
JLOC1JLOC1_22874.17348e-25393 - 45210060 / 60plus
Harvest21ABC0044410583e-25194 - 25310060 / 60plusABC00444
Harvest35U35_148994413e-25151 - 21010060 / 60plus
Harvest35U35_1489610223e-25194 - 25310060 / 60plus



Contig Sequence (441 bp)

>U35_14899 441 Hv_44K_v2
CAGGTTCAGGCATGGCGGCTCCGACGAGAGCACTGGTCCTCGCCGTGCTTCTGGCGATGG
CCGTCGCCAACGCCGAGGCGGCGTCCGTCGTCGTAGGTCTGGCCAAGTGTGCCGACTGCA
CCAGGAAGAACATGAAGGCCGAGGAAGCTTTCAAAGGTCTTCAGGTGGCGATCAAGTGCA
AGAACGTCCACGGCGAGTACGAGAGCAAGGCGGTGGGCGGCCTCGACGGCACCGGCGCCT
TCAGCGTGCCCCTCGACGCTAACCTCCGCGGCGTCGACTGCGTCGCGCAGCTCCACAGTG
CCGCCTCCAACGCGCCGTGCTCCGGCCAGGAGCCATCCAAGATCGTGCCGGTTTCCGAGG
GCACCACCTTCGGCATCGTCGCCGGTGACACATTGCCACGCCGTCTGCAGCGTCGCCGGA
GTGCAGTCATGACCTGTGCGG



Homology of Contig U35_14899 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2Bradi5g04630.12038e-52
Arabidopsis v10None