barSeed - Barley Seed Development Database

Probe CUST_37529_PI390587928

Source Contig U35_38866

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37529_PI390587928	Hv_44K_v2	ATGTGAAGTGGGCTGAGTTATCCTACAACTTATTCCTAATAGTAGTATCAGGCAGTAGCC	24	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360130	1301	2e-24	1031 - 1090	100	60 / 60	plus	ABC02851 ABC02852
MLOC	MLOC_18437.1	1628	2e-24	421 - 480	100	60 / 60	minus	ABC02852
JLOC1	JLOC1_12760.1	849	8e-25	293 - 352	100	60 / 60	minus
Harvest35	U35_38866	667	3e-25	25 - 84	100	60 / 60	minus

Contig Sequence (667 bp)

>U35_38866 667 Hv_44K_v2
TTTTTTTTTTTTTTTTTAAAAAATGGCTACTGCCTGATACTACTATTAGGAATAAGTTGT
AGGATAACTCAGCCCACTTCACATCCACGGCCCCGGTAACGGCCATTATAGCTAAGCTTA
CAGTTCGCACATGACGGGATCAAGCCCATTAGTCCAAGCACCTCCGTCAGCAACAAATAA
ACAACCTTCCGCCAAACAAGTTCTTCGGAAACAGTTAAGACAAGCAGACAAGCTGTGAAC
ATAAATAGAGCTAGAGGAGCCATGTGCCGCGACTGTGCTAAATCATTAGTACATCATGTG
TCTTTCGGGCCACCCTTCTTTGCAGCCTCAGCAGCAGCCTTCTCTGTTTCGATCTCAGCA
ACGTACTCATCGATCTCGTCTTCCTCAAGTTGGCGAAGACCATCTTTGTGCGTCATCACA
GCGATCTCAATGTTCTTGCCACCACTCTCGACAACCTCAAGAAGGGCTCGGATGGTAAGC
TTGATGGTCTCCTTGCCGGACGTCTCCTTGTAATTCTTCTCAAGGAACTCGCGCATGGAG
TTGGAGTTGCGGCCGGTGGCGTTGGCCTTCCAGGCAGAGAAGGTGCCGGAGGGGTCGGTC
TGGTACAGCGCGGGCTTCTCAGTATAGGGGTCGAAGCCAACTATGAGCGTGGAAAGCCCG
AATGGGC

Homology of Contig U35_38866 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g36710.1	250	3e-63	protein\|peptidase, T1 family, putative, expressed
Brachypodium v1_2	Bradi3g42360.1	250	2e-65
Arabidopsis v10	AT5G66140.1	250	9e-54	\| Symbols: PAD2 \| proteasome alpha subunit D2 \| chr5:26437445-26438677 REVERSE LENGTH=250