barSeed - Barley Seed Development Database

Probe CUST_37457_PI390587928

Source Contig U35_9837

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37457_PI390587928	Hv_44K_v2	GTTTTACCTGCCTGTTCCGACTGAGGAGGCCGCGGAGCTGGAGTGGCTGTCCAATTTCGT	396	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.202	1.014	0.919	0.561	1.246	1.109
Raw	6.896	6.733	5.593	4.731	3.526	3.475

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365841	2431	2e-24	1467 - 1526	100	60 / 60	plus	ABC02157 ABC02455 ABC13200 ABC16177
MLOC	MLOC_61997.2	1979	2e-24	972 - 1031	100	60 / 60	plus	ABC02157 ABC13200
JLOC1	JLOC1_40554.1	2116	8e-25	982 - 1041	100	60 / 60	plus
Harvest21	ABC21133	596	3e-25	397 - 456	100	60 / 60	plus
Harvest35	U35_9837	596	3e-25	397 - 456	100	60 / 60	plus

Contig Sequence (596 bp)

>U35_9837 596 Hv_44K_v2
GAGTAGTATAATTCAGCTTCAAGGCATGGCGCCGGAGTGGGAGGCAGCGTTGGGCATGGA
GCTCGGCATGGGCACGCACTACCACCACGCGCCGCCATCCGCCGCCGCCTCCCCCATGAA
CCACCACCACCACCACCACCACGGCTACTCCCACTCCCAGCCCCCGCACCAGTACCATTT
CTACGGGGGCGCCGCGGGCGGTGACGGCGCCGACCCCATGCGCGTCGACGAGATGCTCGA
CCTGTCCTCCCACCTCGGCGCGCACGACTTCTTCTCCGGCGCCGCCAATGGCCAGGGCGG
CGACAACGCGCCGGCCCCGCCTGCGGCTGCCGCGGCCTCATCGTCCGACCACCAGCACCA
CCACCCGTCGTCCTTCAACCTCTCCTTCGCCGACGAGTTTTACCTGCCTGTTCCGACTGA
GGAGGCCGCGGAGCTGGAGTGGCTGTCCAATTTCGTGGACGACTCCTACCCGGACGTCCC
CAACTACCCGCCGGCCGTGCAGGCGGCGATGGCGGCCGCCGCGAGGAACGGCGGCGTCGT
GGTGAAGCAGGAGAATTCCGCGTCGGCGGCCGCGCCTGGCCGCGGCGCGCGGAGCA

Homology of Contig U35_9837 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None