barSeed - Barley Seed Development Database

Probe CUST_37434_PI390587928

Source Contig U35_2833

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37434_PI390587928	Hv_44K_v2	TCAAGCTCCACGACGGCAACTCCCTCTTCAACCTCACCAAGCCGGGACGGGTCTACTTCA	367	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363050	3782	2e-24	399 - 458	100	60 / 60	plus	ABC02427 ABC02434 ABC06657 ABC06732 ABC08493 ABC30622
MLOC	MLOC_17803.1	1342	2e-24	538 - 597	100	60 / 60	plus	ABC08493
JLOC1	JLOC1_12295.1	1097	8e-25	393 - 452	100	60 / 60	plus
Harvest21	ABC08493	818	3e-25	380 - 439	100	60 / 60	plus	ABC08493
Harvest35	U35_2834	909	3e-25	419 - 478	100	60 / 60	plus
Harvest35	U35_2833	686	3e-25	368 - 427	100	60 / 60	plus

Contig Sequence (686 bp)

>U35_2833 686 Hv_44K_v2
CTAGCCAGCCACAAGACCCAAGACCCAATCCAAGCTCGCTCGCTGGTGCTGTGCATCCGG
AGCTTGAGCTGAGAAGCAGAGGAGAGGATGGGCATGCCGACTCTGCTTCTGCTTCTGGCG
GCGCTGCTGCTCCTCCTCATGTCCATGTCCATGTCCGGCTGCTCCGCGGCGGCGACGTAC
AAGGTTGGCGGGCTGGACGCGTGGGGGGCGCCGCCCTCCACAAAGCCGGACGTCTACATC
CGCTGGGCCAAGTCCGTCCCCGTCAAGCTCGGCGACGCCGTCTTCTTCCTCTACCCGCCC
AGCCAGGACAGCGCCGTCCAGGTCACCGCCAAGGCCTTCGCCGCCTGCGACGTCTCCGAC
CCGCTGCTCAAGCTCCACGACGGCAACTCCCTCTTCAACCTCACCAAGCCGGGACGGGTC
TACTTCACCAGCGACGCCCCCGGACGCTGCCGCAAGGGCCAGAAGCTCTCGCTCGACGTG
CCCGCCGCCGACGGGAAGCTGCTCAAGCCGTCCGCCGACGACGAGGCGGCTCTCAAGGCG
CTTGCGTCGCTGCCGCCTGCCGCTGCCCCCACGGAGGCGCTGCCATCGCTCTCCCCCGAC
GACGACGACGACTCCGGCTCCGTGCCCCGGCGAGCCGGATCCATAGCTCTCGCTGCCGCC
CTGTCTCTCGCCGCTGCTCTCATGCT

Homology of Contig U35_2833 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g02400.1	199	1e-52	protein\|plastocyanin-like domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g77560.1	201	3e-61
Arabidopsis v10	None