barSeed - Barley Seed Development Database

Probe CUST_37412_PI390587928

Source Contig U35_2855

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37412_PI390587928	Hv_44K_v2	TCGGTGTTCATCTGTGTCGGGTCATTGTTCAATGGTTTTCTTGGGCAATCCATATTTTTT	1576	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78452.1	2007	2e-24	181 - 240	100	60 / 60	minus	ABC03212 ABC03213 ABC06513 ABC06514 ABC19426
MLOC	MLOC_78452.2	1911	2e-24	109 - 168	100	60 / 60	minus	ABC03212 ABC03213 ABC06513 ABC06514 ABC19426
JLOC1	JLOC1_52286.1	2463	8e-25	1730 - 1789	100	60 / 60	plus
Harvest21	ABC06510	886	3e-25	757 - 816	100	60 / 60	plus
Harvest35	U35_2855	1706	3e-25	1577 - 1636	100	60 / 60	plus

Contig Sequence (1706 bp)

>U35_2855 1706 Hv_44K_v2
GCAGAGATGAAGCCCTCGACAGCCATAGTCCTGGTGCTCGGTGTGGTGGCACAATATGTC
GCCCTGGCCACCGCGGCCGGTCCCAAGGTCATCATCGTCGGCGCCGGCATGTCAGGGATC
TCGGCCGGGAAGAGGCTGTCGGAGGCCGGGATCACGGACCTGGTGATCCTGGAGGCGACG
GACCGCATCGGCGGGCGCATCCACAAGGAAAAGTTCGCCGGGGTGAACGTGGAGATGGGG
GCCAACTGGGTGGAAGGGGTGAACGGCGACGAGATGAACCCCATCTGGACCATGGCCAAC
GGCACCGGCGGCCTCAACCTCAGGACCTTCCGCTCCGACTTCGACCACCTCGCCGGCAAC
ACCTACAAGCAGGACGGTGGCCTCTACGACGAGAAGGTTGTTGAGAAGATAATCGAGAGG
ATGGAAGAGGTGGAGGAGAGCGGGAGCAAGCTCTCCGGCACCTTGCACGCCAGCGGCCAG
CAGGACATGTCTGTCATGGCCATGCAGCGCCTCAATGACCATATGCCTTCGGGGCCCGCG
ACACCAGTTGACATGGTGATCGACTACTACCAGCACGACTTCGAGTTCGCCGAGCCGCCG
CGCGTGACGAGCCTGCAGAACACACAACCACTGCCGACGTTCAACAACTTCGGCGATGAC
GTTTACTTCGTGGCGGACCAGCGGGGTTACGAGTCCGTGGTGTACCATGTCGCGGGGCAG
TACCTCAAGACCGACCGCAAGTCCGGCGCCATCACCGACCCAAGGCTCAAGCTAAACACG
GTGGTGCGGGAGATCACCTACTTCCCCAGCGGCGTCATGGTGAAGACCGAGGACAACAAG
GTGTATCGGGCCGACTACGTCGTGGTCTCTGCCAGCCTAGGCGTTCTGCAGACCGACCTC
ATACGGTTCAAGCCACAACTGCCTTCATGGAAGATCGTGTCCATTTACCAGTTTGACATG
GCCGTGTACACCAAGATCTTCCTCAGGTTCCCCAAGAGGTTCTGGCCAGAGGGCCCCGGC
AAGGAGTTCTTCCTCTACGCCAGCGGCCGGAGAGGCTACTTCCCGGTGTGGCAGCAGTTC
GAGACGCAGTACCCGGGGTCCAACGTGCTGCTCGTCACCGTCACCGACGACGAGTCGAGG
AGGATCGAGCAGCAGTCCGACAACCAGACCATGGCGGAGGCGGTGGCGGTGCTCAGGAAG
ATGTTCCCCGGAAAAGACGTGCCGGACGCCACCGAGATCCTCGTGCCGAGGTGGTGGTCC
AACAGGTTCTTCAAGGGCTCCTTCTCCAACTGGCCCATCGGCGTCAATCGCTACGAATAC
GACCTCATCCGGGCCCCCGTTGGTAGGGTTTACTTCACGGGCGAGCACACGAGCGAAAAG
TACAACGGATATGTCCATGGAGCGTATCTTGCAGGTATCGACTCTGCTGACATTCTCATC
AACTGTGCCAAGAATAAGATGTGCAAATACGATGTCAAGGGAAAGCATGACTAATCTCAA
GGTTAATTAATCACGGAGTCACCAGCTGAAACGCCAGAAGTAACGGGGTGAAACCGAGTC
AGCGCGCTCCATTATTTCGGTGTTCATCTGTGTCGGGTCATTGTTCAATGGTTTTCTTGG
GCAATCCATATTTTTTTTCTCCTTGCGACATGTTTTTTGTTTGGCTCTTTTGCAGCTGTT
CTCACTTAATTATTATTCATAAAACT

Homology of Contig U35_2855 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g20284.1	479	0.0	protein\|amine oxidase, flavin-containing, domain containing protein, expressed
Brachypodium v1_2	Bradi3g25580.1	496	0.0
Arabidopsis v10	AT5G13700.1	472	1e-147	\| Symbols: ATPAO1, APAO, PAO1 \| polyamine oxidase 1 \| chr5:4420222-4422974 REVERSE LENGTH=472