barSeed - Barley Seed Development Database

Probe CUST_37411_PI390587928

Source Contig U35_2856

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37411_PI390587928	Hv_44K_v2	TCTACGACGAGAAAGTTGTTGAGAATATAATCGAGAGAATGGATGAAGTGGAGGAGAGCG	425	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78452.1	2007	2e-24	1375 - 1434	100	60 / 60	minus	ABC03212 ABC03213 ABC06513 ABC06514 ABC19426
MLOC	MLOC_78452.2	1911	2e-24	1303 - 1362	100	60 / 60	minus	ABC03212 ABC03213 ABC06513 ABC06514 ABC19426
JLOC1	JLOC1_52286.1	2463	8e-25	536 - 595	100	60 / 60	plus
Harvest21	ABC06512	623	3e-25	426 - 485	100	60 / 60	plus
Harvest35	U35_2856	623	3e-25	426 - 485	100	60 / 60	plus

Contig Sequence (623 bp)

>U35_2856 623 Hv_44K_v2
CTCCAAGCTTGGTGAGAGAGGGAGAGAAAGAAGGAGAAGGATGCTAGAGATGAAGGCCTG
CACGGCCATAGCTCTGGTGCTCGTTGTAGCAGCACAATGTGCCGCCCTGGCCACCGCCGC
CGGTCCCAGAGTCATCATCGTCGGCGCCGGCATGTCCGGGATCTCTGCTGGGAAGAGGCT
GTCCGAGGCTGGGATCACTGACCTGGTGATCTTGGAGGCGACGGACCGCATCGGAGGGCG
CATCCACAAGACCAAGTTCGCCGGGGTGAACGTTGAGATGGGGGCCAACTGGGTGGAAGG
GGTGAACGGAGACGAGATGAACCCCATCTGGACCATGGCCAATGGCACCGGAGGTCTCAA
CCTGAGGACCTTCCGCTCCGACTTCGACCACCTCGCCAGCAACACCTACAAGCAAGACGG
TGGCCTCTACGACGAGAAAGTTGTTGAGAATATAATCGAGAGAATGGATGAAGTGGAGGA
GAGCGGGAGCAAGCTCTCCGGCACCTTGCACCACAGCGGCCAGCAGGACATGTCTGTCAT
GGCCATGCAACGCCTCAACGACCATATGCCTTCGGGTCCAGCTAGGCCGGTGGACATGGT
GATCGACTACTACCAGCACGACT

Homology of Contig U35_2856 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g20284.1	479	1e-71	protein\|amine oxidase, flavin-containing, domain containing protein, expressed
Brachypodium v1_2	Bradi3g25580.1	496	6e-103
Arabidopsis v10	None