barSeed - Barley Seed Development Database

Probe CUST_3740_PI390587928

Source Contig U35_14375

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3740_PI390587928	Hv_44K_v2	TACAGGTTGTGTGGTCTTGTCGCGGTTATAAACAGAGTTGAATGAAAATTGTTCTGCAAA	2607	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.307	1.257	1.226	0.761	0.200	0.159
Raw	34512.867	51521.400	44303.633	42300.767	4032.410	3464.520

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53175.1	4997	2e-23	374 - 431	100	58 / 58	minus	ABC01424
MLOC	MLOC_53175.2	2765	2e-23	25 - 82	100	58 / 58	minus	ABC01424
JLOC1	JLOC1_34134.1	3439	1e-23	2703 - 2760	100	58 / 58	plus
Harvest21	ABC01424	2676	3e-25	2601 - 2660	100	60 / 60	plus	ABC01424
Harvest35	U35_14375	2682	3e-25	2608 - 2667	100	60 / 60	plus

Contig Sequence (2682 bp)

>U35_14375 2682 Hv_44K_v2
GTGCCCACCGCCATCCTCCTCTGCCTCCCACTCTATCGTCTTCCTCCTCATCTCCGGCGC
CACTCCGCCGCCCCTCGACTCCTCCAAGGACCAACGAAAGATGGCGTCCCATATTGTTGG
GTACCCTCGCATGGGCCCCAAGAGGGAGCTCAAGTTTGCCTTGGAGTCTTTCTGGGATGG
GAAGAGCAGCGCTGAGGATCTGGAGAAGGTTGCCACCGACCTCAGGGCCAGCATCTGGAA
GCAGATGTCAGAGGCTGGGATCAAGTACATTCCCAGCAACACCTTCTCATACTATGACCA
GGTGCTTGACACAACGGCCATGCTTGGTGCTGTCCCGGACCGCTACTCATGGACTGGCGG
AGAGATTGGCCACAGCACCTACTTCTCAATGGCCAGAGGCAATGCCACTGTCCCTGCTAT
GGAGATGACCAAGTGGTTTGACACCAACTACCACTTCATTGTACCTGAATTGAGCCCAGC
AACCAAGTTCTCATATGCTTCACACAAGGCTGTCTCTGAATACAAGGAGGCAAAGGCGCT
TGGTGTTGACACGGTTCCAGTGCTTGTTGGACCAGTCTCATACTTGCTGCTCTCTAAGGC
GGCGAAGGGTGTGGAGAAATCATTCTCTCTTCTTTCACTTCTTGATAGCATTCTTCCCAT
CTACAAGGAGGTTGTGGCTGAGCTGAAGGCAGCTGGTGCTTCATGGATTCAGTTTGATGA
GCCCACCCTTGTTAAGGACCTTGCTGCTCATGAATTGGCCGCGTTCTCTTCAGCATATGC
TGAACTTGAATCAGCACTCTCTGGATTGAATGTCCTTATTGAGACATACTTTGCCGATGT
TCCTGCTGAATCTTACAAGACCCTCACATCATTGAGTGGCGTGACTGCCTATGGTTTTGA
TCTTGTTCGTGGAACTAAGACAGTTGAGCTTATCAAGAGCACGGGTATCCCATCTGGGAA
GTACCTATTTGCTGGTGTTGTAGATGGACGGAACATTTGGGCTGATGATCTTGCTGCATC
TCTCAGCACTCTTCAGTCTCTTGAGTCTGTTGTTGGCAAGGACAAACTTGTGGTGTCTAC
CTCCTGCTCACTGATGCACACTGCTGTTGATCTTGTGAACGAGACCAAGCTCGACAGTGA
GATCAAGTCATGGCTCGCATTTGCTGCCCAAAAGGTGGTTGAGGTGAATGCCCTTGGCAA
GGCTTTGGCTGGTCAAAAGGATGAGGCCTACTTTGCGGCCAATGCCGCTGCTCAGGCCTC
AAGGAGGTCGTCACCCAGGGTGAACAATGAGGAGGTTCAGAAGGCTGCGGCTGCTTTGAA
GGGATCTGACCACCGCCGTGCTACCCCTGTTTCTGCTAGACTGGATGCTCAGCAGAAGAA
GCTCAACCTTCCTGTCCTTCCGACAACGACAATTGGTTCATTCCCTCAGACAATGGACCT
CAGGAGGGTCCGCCGTGAGTACAAGGCGAAGAAGATCTCTGAGGAGGACTATGTCAGTGC
TATCAAGGAAGAAATTAGCAAGGTTGTCAAGATCCAAGAGGAGCTTGACATCGATGTGCT
CGTCCATGGAGAGCCTGAGAGAAATGACATGGTTGAGTACTTTGGCGAGCAACTATCTGG
TTTTGCATTTACTGCCAATGGATGGGTGCAATCCTATGGATCACGTTGCGTGAAGCCACC
GATCATCTATGGTGATGTCAGCCGCCCCAACCCCATGACTGTCTTCTGGTCCAAGATGGC
TCAGAGCATGACCCCTCGCCCAATGAAGGGAATGTTGACTGGCCCAGTCACAATCCTCAA
CTGGTCTTTTGTCAGGAACGACCAGCCAAGGTTTGAGACATGCTACCAGATTGCTCTTGC
CATTAAAAAGGAGGTTGAGGATCTTGAAGCTGGTGGTATTCAGGTGATCCAGATCGACGA
GGCTGCTCTAAGAGAGGGTCTGCCACTGCGCAAGTCGGAGCATGCTTTCTACCTGGACTG
GGCCGTCCACTCGTTCAGAATCACCAACTGCGGTGTGCAAGATACCACTCAGATCCACAC
CCACATGTGCTACTCCAACTTCAACGATATCATCCACTCCATCATCAACATGGACGCCGA
CGTCATCACCATTGAGAACTCACGCTCCGACGAGAAGCTCCTCTCGGTCTTCCGCGAGGG
CGTGACCTACGGGGCCGGCATTGGCCCCGGCGTCTACGACATCCACTCCCCCAGGATCCC
CTCCACGGAGGAGATTGCCGACCGCGTCAACAAGATGCTCGCGGTGCTCGACACCAACAT
CCTCTGGGTGAACCCTGACTGCGGCCTCAAGACCCGCAAGTACACCGAGGTGAAGCCCGC
CCTGACTAACATGGTCGCTGCGGCCAAGCTCATCCGCACCCAGCTCGCCAGCACGAAGTG
AGGAGCCATGAAATCGAACAGCCTGATGATACTACTACCTATTGTTTTGTGGGGACAGAG
CGCCAAACGAGCCGTTTGTTTCGAATAATCCGATTCTTTATCGTACCGCCCGAGTCTGGC
TAGGGTTAGTCCTGCTGTTATGGTAAAACTGTTACATGTTGATGGCATACGTTGTATTCT
ATGTGTTTGGTGGGTGGTCTCATTGTTTACAGGTTGTGTGGTCTTGTCGCGGTTATAAAC
AGAGTTGAATGAAAATTGTTCTGCAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14375 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os12g42876.1	767	protein\|5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative, expressed
Brachypodium v1_2	Bradi1g13290.1	767
Arabidopsis v10	AT5G17920.1	765	\| Symbols: ATCIMS, ATMETS, ATMS1 \| Cobalamin-independent synthase family protein \| chr5:5935771-5939195 FORWARD LENGTH=765