barSeed - Barley Seed Development Database

Probe CUST_3739_PI390587928

Source Contig U35_14376

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3739_PI390587928	Hv_44K_v2	GAATAATCTGGACCTCGTGTCCACTTGTTGGTTATTAGGGTAGTTGTTTCTCGGCAGGAT	2451	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.902	1.452	1.116	0.771	0.302	0.272
Raw	52006.167	62583.500	42032.400	45415.033	6301.437	6227.817

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76000.1	3444	2e-24	3322 - 3381	100	60 / 60	plus	ABC01424
MLOC	MLOC_76000.8	2705	2e-24	2550 - 2609	100	60 / 60	plus	ABC01424
MLOC	MLOC_76000.3	3082	2e-24	2927 - 2986	100	60 / 60	plus	ABC01424
JLOC1	JLOC1_50693.3	2884	8e-25	2472 - 2531	100	60 / 60	plus
JLOC1	JLOC1_50693.2	2863	8e-25	2451 - 2510	100	60 / 60	plus
JLOC1	JLOC1_50693.1	3092	8e-25	2680 - 2739	100	60 / 60	plus
Harvest21	ABC01427	712	3e-25	131 - 190	100	60 / 60	minus
Harvest21	ABC01426	2663	3e-25	2441 - 2500	100	60 / 60	plus
Harvest21	ABC01423	1767	3e-25	1555 - 1614	100	60 / 60	plus
Harvest21	ABC01421	752	3e-25	149 - 208	100	60 / 60	minus
Harvest21	ABC50409	311	1e-23	121 - 181	98	60 / 61	minus
Harvest35	U35_14376	2659	3e-25	2452 - 2511	100	60 / 60	plus

Contig Sequence (2659 bp)

>U35_14376 2659 Hv_44K_v2
CTCGCCGTTCTCTGCCTCTCCCCCTCCCCCGTCGCTCGCCGCCGTCCCTCCCCGCCTCCG
CGCACCCAGGAAAGATGGCGTCCCACATTGTCGGATACCCGCGCATGGGCCCCAAGAGGG
AGCTCAAGTTTGCCCTCGAGTCTTTCTGGGATGGCAAGAGCAGCGCCGAGGATTTGGAGA
AGGTTGCCACCGACCTCAGGGCAAGCATCTGGAAGCAGATGGCTGGTGCTGGGATCAAGT
ACATCCCCAGCAACACCTTCGCTTACTACGATCAGGTTCTTGACACCACCGCCATGCTTG
GTGCCGTCCCAGACCGTTACTCATGGACCGGTGGGGAGATCAATTTGAGCACCTACTTCT
CGATGGCTAGGGGTAACGCCACCGTCCCTGCTATGGAGATGACCAAGTGGTTTGACACCA
ACTACCACTTCATCGTCCCTGAATTGGGCCCTGACACCAAGTTCTCTTACTCTTCTCACA
AGGCTATCAATGAGTACAAGGAGGCTAAGGCGCTTGGCGTTGATACCGTCCCAGTGCTTG
TTGGACCAGTCTCATACTTGTTGCTCTCAAAGGCTGCCAAGGGTGTAGAGAAATCGTTCT
CTCCTCTTTCCCTTCTTAGCAGCATCCTTCCTGTCTACAAGGAGGTTATTGCTGAGTTGA
AGGCAGCTGGTGCTTCATGGATTCAGTTTGACGAGCCCACCCTTGTGAAGGATCTTGAAT
CCCACCAATTGGCCGCATTCTCTGCAGCTTACACAGAACTTGAGTCGACACTTTCTGGAC
TGAACGTTCTTGTTGAGACCTACTTCGCTGATGTTCCCGCAGAATCATACAAGACTCTCA
CATCATTGAGCAGCGTGACTGCTTATGGTTTTGACCTCGAACGTGGAACCAAGACTCTTG
AGCTTGTCAAGAGTGGTTTCCCTGCTGGAAAGTACCTTTTTGCTGGTGTTGTAGATGGAC
GCAACATTTGGGCTGATGACCTTGCTGCATCTCTTGCCACTCTTCAGTCTCTTGAGGCTA
TTGTTGGGAAGGACAAGCTTGTTGTATCGACCTCTTGCTCACTCATGCACACTGCTGTGG
ACCTTGTAAATGAGACCAAGCTTGATGATGAGATTAAGTCATGGCTCGCGTTTGCTGCCC
AAAAGGTCGTTGAAGTGAATGCCCTTGCCAAGGCATTGGCTGGTCAAAAGGATGAGGCTT
ACTTTGCAGCAAATGCTGCTGCTCTGGCCTCAAGAAGGTCGTCACCACGTGTCACAAATG
AGGAGGTCCAGAAGGCTGCTACTGCCCTGAAGGGCTCTGATCACCGCCGTGCTACCACCG
TTAGCGCTAGGTTGGATGCGCAGCAGAAGAAGCTCAACCTTCCGGTCCTTCCCACGACCA
CCATTGGTTCGTTCCCACAGACCGTGGAGCTCAGGAGAGTCCGCCGTGAGTACAAGGCAA
AGAAGATCTCTGAGGAGGAGTACACCAATGCCATCAAGGAGGAGATCAGCAAGGTTGTCA
AGATCCAAGAAGAGCTTGACATTGATGTGCTCGTGCACGGAGAGCCTGAGAGGAACGATA
TGGTTGAGTACTTTGGTGAGCAGCTCTCTGGTTTCACATTCACTGCCAATGGATGGGTGC
AATCTTATGGATCAAGGTGCGTCAAGCCACCGATTATCTATGGTGACGTGAGCCGCCCCA
ACCCGATGACCGTGTTCTGGTCCAAGATGGCACAGAGCATGACTGCTCGCCCAATGAAGG
GAATGTTGACAGGCCCCGTCACAATCCTTAACTGGTCTTTTGTCAGAAATGACCAACCGA
GGTTTGAGACTTGCTACCAGATTGCTCTTGCAATCAAGAAGGAGGTCGAGGACCTTGAGG
CTGGTGGTATTCAGGTCATCCAAATTGACGAGGCTGCTTTGAGAGAGGGTCTGCCACTCC
GCAAGTCCGAGCACGCTTTCTACTTGGACTGGGCCGTGCACTCCTTCAGGATCACCAACT
GTGGTGTCCAGGACACGACCCAGATCCACACCCACATGTGCTACTCCAACTTCAACGACA
TCATCCAGTCCATCATCAACATGGACGCCGATGTGATCACCATTGAGAACTCGCGGTCCG
ACGAGAAGCTTCTCTCCGTCTTCCGCGAGGGTGTGGTGTACGGTGCTGGCATTGGCCCGG
GCGTGTACGACATCCACTCCCCCAGGATCCCGTCCAAGGAGGAGATTGCCGACCGCGTCA
ACAAGATGCTCGCTGTGCTCGACACCAACATCCTCTGGGTGAACCCCGACTGCGGTCTCA
AGACCCGCAAGTACGCCGAGGTCAAGCCCGCCCTCACCAACATGGTCGAGGCCGCCAAGC
AGATCCGCGCCGAGCTCGCCAAGGCGCAGTAAGCAGTGCTCGTATAGCAGCTCTCCCCCC
CTTTTAATTGCAAGGAGGATGTCACCGTTGCCATGGCCGGCGTTTTACTTTGAATAATCT
GGACCTCGTGTCCACTTGTTGGTTATTAGGGTAGTTGTTTCTCGGCAGGATGTGCTCATC
CCTTGATTCGGTGGCTTTTTGAGGCGGTTGTCAGTGTGTATTGTAAACTTGAGTGGCGAA
TTGTTCATCTGTGTCTGAGTTTGTGTTACGTTACGGTTTCAAATTACAAAATTTCTTCAA
AAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14376 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os12g42876.1	767	protein\|5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative, expressed
Brachypodium v1_2	Bradi4g01200.2	766
Arabidopsis v10	AT5G17920.1	765	\| Symbols: ATCIMS, ATMETS, ATMS1 \| Cobalamin-independent synthase family protein \| chr5:5935771-5939195 FORWARD LENGTH=765