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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_37382_PI390587928Hv_44K_v2AACAACCGTGGCGTACGTGTGACTTGGCTGGTTAATTCCCTCCTGATTGTAAATATGTCT455GeneList: darkgrey
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.3890.5081.3752.4351.2810.922
Raw 745.8321522.0643678.7279820.6271893.8471476.605



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_64888.17392e-2485 - 14410060 / 60minus ABC03511 ABC03512 ABC03514 ABC05348 ABC11923 ABC14284
JLOC1JLOC1_42647.15748e-2559 - 11810060 / 60minus
Harvest21ABC042035023e-25439 - 49810060 / 60plus
Harvest21ABC0420212863e-25456 - 51510060 / 60plus
Harvest35U35_60435843e-25456 - 51510060 / 60plus



Contig Sequence (584 bp)

>U35_6043 584 Hv_44K_v2
GGTCAGTTCTTCGCTTACTCAACAGGTTCTGCACTCCACAGCTTCCTAATCTTAATCTTC
AGGCATCACAGAGTTCGGCCTTTAGACAGTCTCTCCATCAACTTTTGCGAAAGAAGAAGG
GCAAGAGATCATGGCGGGTGCGGCGAAGGCGTCATGGATGGTGGCGATGAGCGTGGGCGC
GGTGGAGGCCCTTAAGGACCAGGCCGGCCTCTGCCGCTGGAACTACGCGCTCAAGTCCAT
CCACAGGACCGCCAAGGCCAGAGCAAACGTCCATGGTGGCGTCTCGCTGAGCACGAAGCA
GCTTCCAGCGTCGGCCGCAGCGGTGGCGGAGAGGCGGCGGGCGGAGAAGGCCGAGGATGG
GCTGAGGACCGTCATGTACCTCAGTTGCTGGGGTCCCAACTAGTGCTAGCTTAGCGAGAG
GTGTTTCTGCAGTTCTGCTAGCTCCAGCCGCCAGCAACAACCGTGGCGTACGTGTGACTT
GGCTGGTTAATTCCCTCCTGATTGTAAATATGTCTCACCATGATGATGATGATGATGATG
ATGATGAAATTTCCCCCACTTTGAGTTCACAGACATAACCCTGC



Homology of Contig U35_6043 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None