barSeed - Barley Seed Development Database

Probe CUST_3734_PI390587928

Source Contig U35_5214

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3734_PI390587928	Hv_44K_v2	GTTGAAGAGATGTGAAAGTATTTTGGCAGCAGTGAGCAAATAAAAGGGCCTTTGATAAAA	1396	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51720.3	1960	2e-23	5 - 62	100	58 / 58	minus	ABC11665
MLOC	MLOC_51720.1	6425	2e-23	4936 - 4993	100	58 / 58	minus	ABC07577 ABC11665
MLOC	MLOC_51720.2	3512	2e-23	147 - 204	100	58 / 58	minus	ABC11665 ABC19347
JLOC1	JLOC1_33061.2	2018	1e-23	1732 - 1789	100	58 / 58	plus
JLOC1	JLOC1_33061.1	1450	1e-23	1164 - 1221	100	58 / 58	plus
Harvest21	ABC11665	1469	3e-25	1397 - 1456	100	60 / 60	plus	ABC11665
Harvest35	U35_5214	1469	3e-25	1397 - 1456	100	60 / 60	plus

Contig Sequence (1469 bp)

>U35_5214 1469 Hv_44K_v2
CCCTGAACCTCCGCGTCGCCATTTCCCCCTCCAGACCGCCGCGATGGCCGGAGGCGGCGG
CAAGCCGTTCGGGGACAACGTGTTCGCGGGCCACGCTGCCGCCGGAGCCGCGGCGATCAG
CGCCTCCGCGGTCGCCGTCCACCCCCTCGACACCGTCAAGAGCCTCCTCCAGTTGAGCGC
GGCGGGGCAGAAGCAGAAGATGGGGCTCCGCCAGGCTGTGGACCGGCTCATGCTCGTCTC
CGGCCCCGCAGGTCTTTACAATGGCATTGGATGGTCAATATTAGGTAAACTGCCTGGTTT
GGGAGCACGTTTTGGGACCTATGAGCTTTTAACAGCCTTCTATAAAGATGGGAGGGAGGA
TAACCATGTTAATTATTCTGAGGCTATGTTGGCTGGCATAACTGCTGGTGCTGTAGAGGC
ATTTGTGTGCACGCCATTTGAACTTCTCAAACTTCGGTCCCAAGTTGGTTCTGCCATACC
TATGAAAGCTACGAACCCTGCTAATGTTATACAGGAGTCGTTTCCACTGCTTTCCAAGCT
ATTACCTGGTTATGTCCCTGACATAAGAGTATGGAATAGCAGTGTCAGTCTGTTGTCCAA
TCTTTCCCCCAAGCATCCTGACATGATGGGTGCCCTGAAACAGCACCCGTGGATTCTGAC
TGGCTCTGGGAAGCCCCCGTTACCCTCTGATGTTCAGGTGCCTTTGAGAGTGATAGCACT
TGAAGGATGGGGTGCTTTATGGAGAGGGCTTAGGCCAGGGATAGCCCGAGACTGTGTCTT
TAGTGGAATGTTCTTTTCTTGTTGGCAATTCATACATACGGCGATGCTTACTTGGAGGTC
TGTTAACATGAACCCTGAACCCAGGAATTTAGAAGAAGCAGGCCTTGTGCCCCCTTTAGC
TTCTAGTCTTGCTGCAGGCTTCTCTGGAGTTGTAGCAGCTGCTGCTTCACACACGTTTGA
TACTGCAAAAAGTCGTTCACAGTGCACTGTGATACCTAAGTATATAGCAATGGAGAGGAG
GTTTCTTAAATGGAGAGCACCAGGAATGTGGATAGAGAGAATGACAGGAACAACACCTGC
TGATAGGAATGTTCTCTTTCGTGGCATTGGGCTACGGATGGCGCGCAGTGGAATCGCATC
TTTTGTACTTGTTGGGTCCTACTATTTAGCCGTAGATCAGCTCTTGTAGATGGCAGGCAG
AGAAACCATTTATGAAATTCAAACACCTTGATTATATGCATCTGCTGAACAACCAGAGAA
GAGGTAACTATGTGGTACCCTTTTCGTCTCATCCAGACTTAATTGGAGCTGTGTGCTCCA
GGATAGAGTTTTGGTTACTAATGTACATGTTTATAACAACCGGAATTGAAGGTTCGCCTT
CAGTTTTGTCGCTCGTGTTGAAGAGATGTGAAAGTATTTTGGCAGCAGTGAGCAAATAAA
AGGGCCTTTGATAAAAAAAAAAAAAAAAA

Homology of Contig U35_5214 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g44540.2	378	0.0	protein\|mitochondrial carrier protein, putative, expressed
Brachypodium v1_2	Bradi5g16330.2	381	0.0
Arabidopsis v10	AT4G15010.1	378	1e-112	Mitochondrial substrate carrier family protein \| chr4:8573125-8574864 REVERSE LENGTH=378