barSeed - Barley Seed Development Database

Probe CUST_37338_PI390587928

Source Contig U35_6091

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37338_PI390587928	Hv_44K_v2	GCGGCGACATGGAACATCACTTCTGTGCGATTAGTACTGTAACTTTGAGAACTGAAATTA	1187	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_25665.3	1233	2e-24	834 - 893	100	60 / 60	minus	ABC12682
MLOC	MLOC_25665.5	804	2e-24	413 - 472	100	60 / 60	minus	ABC12682
MLOC	MLOC_25665.6	864	2e-24	506 - 565	100	60 / 60	minus	ABC12682
MLOC	MLOC_25665.7	729	2e-24	371 - 430	100	60 / 60	minus	ABC12682
MLOC	MLOC_25665.1	1124	2e-24	733 - 792	100	60 / 60	minus	ABC12682
MLOC	MLOC_25665.4	892	2e-24	508 - 567	100	60 / 60	minus	ABC12682
MLOC	MLOC_25665.2	1120	2e-24	729 - 788	100	60 / 60	minus	ABC12682
MLOC	MLOC_11594.1	1222	3e-21	422 - 481	97	58 / 60	plus	ABC12682
MLOC	MLOC_11593.1	1265	3e-21	424 - 483	97	58 / 60	plus	ABC12682
MLOC	MLOC_11594.2	1227	3e-21	422 - 481	97	58 / 60	plus	ABC12682
JLOC1	JLOC1_17498.3	1004	8e-25	340 - 399	100	60 / 60	plus
JLOC1	JLOC1_17498.2	1015	8e-25	339 - 398	100	60 / 60	plus
JLOC1	JLOC1_17498.1	1007	8e-25	339 - 398	100	60 / 60	plus
JLOC1	JLOC1_7689.2	1194	2e-21	420 - 479	97	58 / 60	plus
JLOC1	JLOC1_7689.1	1189	2e-21	420 - 479	97	58 / 60	plus
Harvest21	ABC12682	1251	6e-22	1188 - 1247	97	58 / 60	plus	ABC12682
Harvest35	U35_6091	1656	3e-25	1188 - 1247	100	60 / 60	plus

Contig Sequence (1656 bp)

>U35_6091 1656 Hv_44K_v2
GTTCAACATCCAAATCAATAACCTCACTCAGTTCTTGCCGCAAGATCGGGTCTGTGAGTT
TGCAAAGCTCACCCCCATCCAGCTGCTAGAAGAGACAGAGAAGGCTGTGGGCGATCCCAA
CTTACCTGTTCAGCATCGCCAGCTTATAGAACGGAGCAGGGAGCTCAGGAATATTGAAGT
GGTAAACATCAATCCTTCCATGTTTTCCCTGTTCAACATCTGACAGTGTTGACAATTCTC
GCATGCACATAAAAAACATTTTAAATCGGTTGCTGCGGGTGGCGGTGCTCTGGGGTGCAA
GGGTAGCGTGGTGCACAACTCCGACTGTTGAAGACACTGCGGCACAACCACGTCGGTCTG
TGTGCAGCCCCAGTTCTTCAACACTAACCTGACCTTCCATAAGTGGGCGTTCAGAGGTTT
GGCGCCCTTGCCTATCCATTCTCTGAATCGGTTTGGTGTGGTGGAGATGTAAGTGTCTGA
TAGTCTTCAGTTTGTTAGAACAAAGGGTACGAGGTAAATACAAGATTCATTGCTTGCTGG
TTTGTTACGATATTTCACCTGATGGGAGATAAGATGAATTACTTGCTGGTTTGGTATGAT
ATTTGGCCTGACTGGAGAAAAGATGAATTACTTGCTGGTTTATCTGAGTAACTTGGTTGC
ATTAATACTAAAAACACATGTTATCTGTTTCTCCCTTGCTATTTCTATCTAGGGAAGATT
ATAGTTTGACCATGGAGTAGAAATCAAATGCTTCATATTGGAATGTTTGTTGGATAAGAA
GGTACAAAAACTAAACGGTGTTCTCATGGCTTTTCTTATTTATGTTTGGTGTTCAAGATA
CTTATGCCACCATGTAAAATATTTATCTAATAACTTCTCTCTTGTTGTGCAGCTATATCG
GAACCTCTTGATAATGCAGTAGATGAGCTTTGTAATATCTTCTACCATCTTATATGAACT
AGATACTCGCTAATTTAAATTGTTTGATCATACTCAAACGCTTGAAACACGAAGTATTCT
ATTGTAAGCTGAAAAATTGTGATGTCACATTCATGTTTCTCGAAAAACACTCTATACTGC
TATCACATTTATTTGTTTATTTTGTTGCATTTGTGTATTATAACTCAATGCTCTGTTGAT
CAGCGTGTTGGTAACTTCGCTCCCTAACACATGCCTCATCTCTGATGGCGGCGACATGGA
ACATCACTTCTGTGCGATTAGTACTGTAACTTTGAGAACTGAAATTATTATAACCAGTGT
TACAAATGTTTGCCGAGGAAAAGTCCTTACAGCAAAAGAAGAACCGGAGGCAGGTTTCCT
ATCTTGACCAGTATTTCCTTTTGTTCCTAATTGAAGCTCTGAAAAAAAATGAAGTGGCCT
AAAATTAAGGACTAATGCTTTTGACATCTGATTTGAGAAAACCGATTTACAGAATATAAC
TAGAAGGTAGATTGTAGCATTCCCCATTGCTATCTTGTACATAGACAGTTGGCGTCTAGA
GTGAAGCCGTCGACGAGCAAGTCGGCGTCTGTGAAGCTTCGCTGGAGCCATTCCAGCTCT
TCCAGAGTCACAAGGAGAGCCTGGAGTCAGGGCAGGGAGGCTGAAGAGCCAGGACACCAA
GGGTGCTAAGCCATTTGCCATTGAGAGGACAATGGC

Homology of Contig U35_6091 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None