- Probe CUST_37333_PI390587928
- Source Contig U35_6096
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_37333_PI390587928 | Hv_44K_v2 | TTCTTAGCTAGTTTCGTGTGGTGCGGCGGAGATGACGTCCAACCAGTTCGATCTCCTCGG | 165 | GeneList: skyblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.865 | 0.798 | 2.644 | 2.492 | 0.815 | 1.001 |
| Raw | 117.620 | 158.734 | 484.697 | 692.806 | 88.880 | 115.795 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK365496 | 1627 | 7e-23 | 170 - 226 | 100 | 57 / 57 | plus | ABC05087 |
| MLOC | MLOC_63163.1 | 397 | 7e-23 | 58 - 114 | 100 | 57 / 57 | minus | None |
| JLOC1 | JLOC1_41367.1 | 336 | 4e-23 | 50 - 106 | 100 | 57 / 57 | minus | |
| Harvest21 | ABC12755 | 405 | 3e-25 | 166 - 225 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC46753 | 405 | 1e-23 | 150 - 206 | 100 | 57 / 57 | plus | |
| Harvest35 | U35_6096 | 424 | 3e-25 | 166 - 225 | 100 | 60 / 60 | plus |
Contig Sequence (424 bp)
>U35_6096 424 Hv_44K_v2 GCAGCTTCCGCAGCACAGCACAGCACAGCACAGAGCGGCTTCTTCTCCGTTGGCGGCGGC GGCTAGGGTTTTACCACCTCCAAAGCCCCAATCTTTCCTCCAATCCAGTCCAGCCCGTCC TCCATGCCGGCGGCCTCCTCCTAGATTCGCATCGCGCCGGAGTTTTTCTTAGCTAGTTTC GTGTGGTGCGGCGGAGATGACGTCCAACCAGTTCGATCTCCTCGGCGACGTCGACAACGA CGACCCCTCGCAGCTCCTCGCCGCCGCCGCCGCCAAGAAGGCCGCCGAGCCCAAGCCCGC CGCCCCGGCCGCCGCAAAGCCAGCCTCCAAGCAGCCCGCCAAGACCCCGCCGCCCGCGGA TGAAGCGAGGGGCAACCGTGGGGACGGCGCCGGGCGCGGGAGGGGCANCCGCGGGGGCGG GTTC
Homology of Contig U35_6096 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |