barSeed - Barley Seed Development Database

Probe CUST_37289_PI390587928

Source Contig U35_14706

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37289_PI390587928	Hv_44K_v2	GAATACTCTGTGTTGGCCTTCTGGCGTTTAGCGATTTGAATTAAGTCTGCCCTGTATATT	1240	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.475	0.739	1.133	1.744	1.130	1.225
Raw	6736.840	16437.980	22363.733	52456.733	12184.447	14411.753

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC01291	1089	3e-25	480 - 539	100	60 / 60	minus	ABC01291
Harvest21	ABC01285	1024	3e-25	72 - 131	100	60 / 60	minus	ABC01285
Harvest35	U35_14706	1371	3e-25	1241 - 1300	100	60 / 60	plus

Contig Sequence (1371 bp)

>U35_14706 1371 Hv_44K_v2
CCCACCACTTCCACGACAGGACAACCAGCAGCGGCCGCCACTTCGTCCACCTCCAGCTCC
GGGAGGACCGCTTCGCTGCCAAATCGCTCGTCGGGCGGCGGGATGGGGGAGGCTTCGACG
CCGGCGATCGCCAGGGATGTCACCGAGCTGATCGGGAACACGCCGCTGGTGTACCTCAAC
AAGGTGACGGACGGGTGCGTGGGGCGCGTCGCCGCCAAGCTCGAGTCCATGGAGCCCTGC
TCCAGCGTCAAGGACAGGATTGGGTACAGCATGATCACCGACGCAGAGGAGAAGGGGTTC
ATCGTCCCAGGCAAGAGTGTGCTGATTGAGCCAACCAGTGGCAACACAGGCATTGGGCTG
GCCTTCATGGCTGCTGCCAAGGGTTACAGACTTGTACTCACGATGCCCGCCTCCATGAGT
ATGGAGAGGAGAATCATCCTGAAGGCTTTTGGTGCTGAGCTGATCCTCACAGACCCACTC
TTGGGGATGAAAGGAGCTGTCCAAAAGGCCGAAGAGCTGGCAGCGAAGACACCCAACTCA
TACATCCTTCAGCAATTTGAGAATGCTGCTAACCCAAAGATTCACTATGAGACAACCGGA
CCTGAAATCTGGAAAGGCACAGGAGGAAAGATCGATGGCCTTGTTTCTGGCATTGGGACA
GGTGGTACCATTACTGGATCTGGAAAATACCTCAAAGAGCAAAATCCTAATATCAAGCTC
TACGGCGTGGAGCCTACCGAGAGTGCTGTCTTAAATGGTGGAAAGCCTGGACCACACAAG
ATCCAAGGAATTGGAGCTGGTTTCATCCCTGGTGTCTTGGATGTTGACATCATTGATGAA
ACCGTACAGGTTTCAAGTGATGAGTCCATTGAGATGGCAAAGTCTCTTGCATTGAAAGAA
GGATTGCTGGTTGGGATCTCTTCTGGTGCGGCTGCAGCTGCGGCAATCAAGGTTGCTCAG
AGGCCTGAAAATGCAGGGAAACTCTTTGTTGTTGTATTCCCAAGCTTCGGAGAGCGCTAC
CTTTCGTCGGTGCTCTTCCACTCCATCAAGAAGGAGGCCGAGAGCATGGTGGTGGAGTGA
CCCCCGAGACTCCTCGAGCGCGCAAAGCTGTTTTCCGAAGTCAAATCCCTCCGTTCATAG
GAGCCCCTCTACAGAAATAAAAGCTTTTGGTGTCCCTGCTAGTGTTGGTCTGACATTTAA
GCCCTTGCAAGTTTGAATCCCACTTTGTGTAGCAAATGGGGAATACTCTGTGTTGGCCTT
CTGGCGTTTAGCGATTTGAATTAAGTCTGCCCTGTATATTTGAATTCCATGTGTCAGCCA
GTGTGCAATAAAGCATCATGGTGCCTTACATGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14706 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g42980.1	409	0.0	protein\|cysteine synthase, putative, expressed
Brachypodium v1_2	Bradi4g01130.2	326	0.0
Arabidopsis v10	AT4G14880.1	322	4e-173	\| Symbols: OASA1, OLD3, CYTACS1 \| O-acetylserine (thiol) lyase (OAS-TL) isoform A1 \| chr4:8518209-8520050 REVERSE LENGTH=322