barSeed - Barley Seed Development Database

Probe CUST_37207_PI390587928

Source Contig U35_43297

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37207_PI390587928	Hv_44K_v2	GTTATAATCAACCCCACCACCAAGAAAACCATCACCGACTACGGTTCCCCTGAGGAGTTC	374	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54528.1	1050	2e-24	566 - 625	100	60 / 60	plus	ABC01603 ABC01604
JLOC1	JLOC1_35102.1	1427	8e-25	620 - 679	100	60 / 60	plus
Harvest21	ABC01605	581	3e-25	420 - 479	100	60 / 60	plus
Harvest21	ABC01602	511	3e-25	449 - 508	100	60 / 60	plus
Harvest21	ABC01604	1093	1e-23	438 - 497	98	59 / 60	plus	ABC01604
Harvest35	U35_43297	438	3e-25	375 - 434	100	60 / 60	plus
Harvest35	U35_14635	1162	1e-23	483 - 542	98	59 / 60	plus

Contig Sequence (438 bp)

>U35_43297 438 Hv_44K_v2
AATGACGAGGCTGCATCTGACGCTGCTGTCGTCACCAGCCGGCGCGCCGCGCTGTCCCTC
CTCGCCGGTGCCGCCGCCGTCGCCGTCAAGGTCTCTCCCGCCGCTGCCGCCTACGGAGAA
GCAGGTACGAGCTGGTGGCCGTGTATGTGAGCGACAGCGACAGTAAGGTTCGGTTTCGGA
TGAGTCACATGGCGAATGAATATGTTGCAGCGAACGTGTTCGGCAAGGCGAAGAAGAACA
CGGACTTCGTGGCGTACAGCGGCGAGGGGTTCAAACTGATGATCCCGGCCAAGTGGAACC
CCAGCAAGGAGCGTGAGTTCCCTGGGCAGGTGCTCCGTTACGAGGACAACTTCGACGCCA
CCAGCAACCTTTCCGTTATAATCAACCCCACCACCAAGAAAACCATCACCGACTACGGTT
CCCCTGAGGAGTTCCTCT

Homology of Contig U35_43297 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None