barSeed - Barley Seed Development Database

Probe CUST_37197_PI390587928

Source Contig U35_2210

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37197_PI390587928	Hv_44K_v2	GTGACTCGTGTAATAAAGCCATGGAAGAAATCATGTATCATCTTTTTTACCTGACCAAAA	1091	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.810	7.443	1.258	0.836	0.859	0.719
Raw	64.908	99.410	14.785	15.620	4.131	3.112

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19475.1	1245	3e-21	1 - 57	98	56 / 57	minus	ABC07171 ABC08937 ABC08958
JLOC1	JLOC1_13498.2	1426	2e-21	1196 - 1252	98	56 / 57	plus
JLOC1	JLOC1_13498.1	1136	2e-21	906 - 962	98	56 / 57	plus
Harvest21	ABC08958	931	2e-21	861 - 919	97	58 / 60	plus	ABC08958
Harvest35	U35_2210	1207	3e-25	1092 - 1151	100	60 / 60	plus

Contig Sequence (1207 bp)

>U35_2210 1207 Hv_44K_v2
ACTTCACAGTTCTTACCATGCGAGGAGCAGCAACAGCCATGAAATGAACAATGTTGACGC
ATTATTCAATTGCAGCGTGACACACGCCTCTCCGATTCACCATTGACTCAGATCTGATGA
CCTCTGCAAACGAATCATGTGGCCTGCATTATTTAGACCTACTAACAGATCTTGTCGAGA
CTGGTCACTTCACTCACCAACCGTAGGCGCTCACTCTACTACATATCCAGTTATCCAGAG
AGAGGGAGAGAGAGACGGAGGAGCGATCCCGAGAGCAGAAGCAATGGCCGGAGACGGAGA
CCTGAAGCTGCTGGGGTTGATGGTGAGCCCGTTCGTGACCCGCGTCCGGCTGGCGCTGCA
CATGAAGGGCGTGGGCTACGAGTACATCGAGACGGACGTGCTGGACAAGGGCGAGCTCCT
CCTCCGCTACAACCCGGTGCACAAGAAGGTGCCCGTGCTCATCCACAACGGCGTGCCGCT
CTGCGAGTCGCAGGTCATCGTGCAGTACGTCGACGAGGTCTGGCCCGCCGGCGCCCCCAT
CCTCCCCGCCGACCCCTACGCCCGCGCCACCGCCCGCTTCTGGGCCGCCTACGTCGACGA
CAAGCTGTTCCCCGCCTGGCTAGGCATCCTCCTGGCGCCGACCGAGGCGGCGAGGGCGGA
GAAGGTCGACGCGACGCTCGCCGCGCTCGCGCAGCTGGAGGTGGCCGCGGCCGAGTGCCT
GGACGGCGGCAGGAGGCCCTTGTTCGGCGGCGACTCCATCGGGTTCCTCGACCTCGCCGT
CGGGTGCAACATGTTCTGGATGGAGGCGCTGCGCAGGATGTTCGGCGTGACGTTCCTCGA
CGCCGGCAGGACCCCGCTGCTGGCCGCGTGGGCGGGGCGGTTCGCGGCCACCGAGGCGGC
GACGGCGGTGGTGCCGGACCCGGACGCCGCGGTGGCGTTCGCCAGGAAGCTTCAGGCCAA
ATACGGCGCCGCCCCGCCTGCCAACTGAATGCAGCAACTTGCATCGGTCCAGTGGACTCC
CAAGTAGTGGTGCTCATCGTGGAAATAAGCCGGGAATCCGATGTGTGCTTTGGAACATGT
AGGAGTACTTGGTGACTCGTGTAATAAAGCCATGGAAGAAATCATGTATCATCTTTTTTA
CCTGACCAAAAAAAAAAAAAAAACCATCTCCATTGATCGTTGATCCGACCAAAAAAAAAA
AAAAAAG

Homology of Contig U35_2210 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g38710.1	234	3e-71	protein\|glutathione S-transferase, putative, expressed
Brachypodium v1_2	Bradi3g31850.1	240	2e-87
Arabidopsis v10	None