barSeed - Barley Seed Development Database

Probe CUST_3718_PI390587928

Source Contig U35_5232

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3718_PI390587928	Hv_44K_v2	AATAAACACAGCAATATTCCTTCTTTTGTTATTCTGATACGATGCCGTCTGGTGTATTTC	1106	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360422	931	6e-24	843 - 901	100	59 / 59	plus	ABC12425
JLOC1	JLOC1_10686.1	845	6e-21	612 - 670	97	57 / 59	plus
Harvest21	ABC12425	846	3e-25	1 - 60	100	60 / 60	minus	ABC12425
Harvest35	U35_5232	1166	3e-25	1107 - 1166	100	60 / 60	plus

Contig Sequence (1166 bp)

>U35_5232 1166 Hv_44K_v2
TTTTAACATCTGTATAATGCACAAACTATTGAGGTAAAGTTGCCAGTTTTATTTTATGGC
AGAATTTATTATAAGAAATAGGAATAGCCGATATCACACCACTTTGCTGTGCTTCTATTG
GACGAAGTTGTAATGATTTTATTGTTATCTTTGAAAACATGCAGGAGTAAACTTGCAATG
ATGTTAGCGTAGTTTTTGTTAAGACGGACCAATATTATATCAATTGTAGTTAGCCCAGTC
ATCTTTTGTGCTCACTTTATATGAAATAACAGAAAAATATGTCATGCCGCTTACAAGATT
GGCTGTGATGCCACCTTCTTCCTTAGTTCTTAAGTTTTACTCACACATATAGCCTGTCTT
GGCGCCCCATATGTTTAATCCACTCTCTGAAGAGGAGCCTTGGCGCAGTGGTAAAGCTGC
TGCCTTGTGACCATGAGGTCATGGGTTCAATTCCTGGAAACAGCCTCTTGCAGAAATGTA
GGGAAAGGCTGCGTACAATAGACCCAAAGTGGTTGGACCTTCCTCGGACCCTGCGCAAGC
GAGAGCTAGGTGCACCGGGCTGCCCTTTTTTTACAAATAAATAAATCTATTGAGCTTAAT
TTTCCAAACCAAGAATACATAACAACCGTAGCATTGGTCAGATGTTCGTACAAACTAATG
AGAAGAAAAAGGGAAGTTTGATGAGCTTGTTGAAGAGAAAGGTGTGAAAGTACTGATTGA
CCCCAAGGCCCTGATGCATGTGATTGGCACCAAGATGGACTTCGTTGACGATCCACTGAG
GTCGGAGTTTGTGTTCATAAACCCGAACTCGAAAGGGGAATGTGGATGTGGTGAATCTTT
CATGACTACGGGCAGCAAAGGATCTACGTCATGATGCGTCATGCTATGATGTAAATAGAG
CGAAGCGTGTGCAGTGGTGGCTCTAGTTACTGATATAATTTTGTCTTGGAAAGCAACGGC
CATTGTAAGCTTGTTGCGTTTGCATCCTAGTAGTGAACACTGCACTTGATTTAATCACCT
CATGGGTGAACCAGCCTGTTACCGGTGCTCTTACATTCATCTTGGCCATGTTGTTGTTAC
GTTCACTAATTCTTGTTTGGGAACAAAATAAACACAGCAATATTCCTTCTTTTGTTATTC
TGATACGATGCCGTCTGGTGTATTTC

Homology of Contig U35_5232 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None