barSeed - Barley Seed Development Database

Probe CUST_37165_PI390587928

Source Contig U35_2242

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37165_PI390587928	Hv_44K_v2	AATTCCAGTAGCTTTTAAGGCAAAAAACAAGGCTGTGATTGAACAGTATCTTGTATTCTG	1051	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15081.1	2800	2e-24	21 - 80	100	60 / 60	minus	ABC08195 ABC14526
JLOC1	JLOC1_10326.1	2828	8e-25	2726 - 2785	100	60 / 60	plus
Harvest21	ABC14526	1112	3e-25	1032 - 1091	100	60 / 60	plus	ABC14526
Harvest35	U35_2242	1132	3e-25	1052 - 1111	100	60 / 60	plus

Contig Sequence (1132 bp)

>U35_2242 1132 Hv_44K_v2
ACTATCTACTATCATGCATTGAAAGCTTCTGCTGAAATTGCTGCAAAAGAAGGTCCTTAT
GAAACTTATGATGGGTGCCCAGTCAGCAAGGGCATTCTTCAACCTGATATGTGGAATGTA
GTGCCATCAGACAGATGGGACTGGCCAGCAATAAGGGGGATGATTTCCAAAGTTGGATTA
AGGAACTCTCTTCTGGTGGCTCCAATGCCCACTGCTTCTACTAGTCAAATTCTTGGCAAC
AACGAGTGCTTTGAACCATACACGTCAAACATTTACAGTCGAAGAGTCCTAAGTGGTGAG
TTTGTTGTAGTGAACAAGCATCTCCTCCATGATCTGACCGAGATGGGTATCTGGTCTCCT
GTCCTGAAAAACAATATTATCTATGACGATGGCTCTGTCCAAAAGATCACTGAGATCCCA
GATGATCTGAAAGCAATTTACAAGACTGTTTGGGAGATCAAGCAGAAAACTGTTGTGGAC
ATGGCTGTGGACCGTGGCTGCTATATCGATCAAAGTCAGAGCCTTAATATCCACATGGAT
CAAGCCAACTCCGGGAAGCTAACTTCCCTGCACTTCCACACATGGTCCAAGGGCCTGAAA
ACTGGGATGTACTATCTGAGGACACGGGCTGCTGCGGATGCGATCAAATTCACAGTGGAC
ACTAGTCTTCTCAAGGATAAGAAGCCTGCCAATGCCGAGGAGGAAGAGGATCTCGAGGCC
AAGATGGCGCAGGTGACCTGCTCCCTGAACAACCGGGAGGACTGCCTGGCATGTGGAAGC
TAGATTCGTCCGCGGCACCCTACGCTAACCTATACTATCCTCTTACTGTTGGCTTGTCAT
TCGATTCGATGCTATATCTGTAGTGGTAATCTGTCTATGCATGATGAACTCTGAATTAAA
AGCAAGCCTTGCTCTAGAACCTCTGCGCACTATGCTATTGCGCGTGTATATATATATGCC
ACCTATATATCTAAGTGTATAATATATGCCTGAAACACTTATCTTCGTTCTTGTACTGTC
CAGAAGTTATTCTGTGCTGTCCAACTTGAAGAATTCCAGTAGCTTTTAAGGCAAAAAACA
AGGCTGTGATTGAACAGTATCTTGTATTCTGAATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_2242 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g56100.1	811	8e-160	protein\|ribonucleoside-diphosphate reductase large subunit, putative, expressed
Brachypodium v1_2	Bradi3g54557.1	811	1e-165
Arabidopsis v10	AT2G21790.1	816	2e-144	\| Symbols: R1, RNR1, CLS8, ATRNR1 \| ribonucleotide reductase 1 \| chr2:9293529-9297580 FORWARD LENGTH=816