barSeed - Barley Seed Development Database

Probe CUST_37164_PI390587928

Source Contig U35_2243

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37164_PI390587928	Hv_44K_v2	CCAATGTTGGCTTGTTATTTGTACTATCTAAAAACATGGGTTGCTGCAGCTGTATATATA	2516	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248176.1	2795	2e-24	2718 - 2777	100	60 / 60	plus	ABC08195 ABC14526 ABC49974
MLOC	MLOC_47103.1	1527	2e-24	33 - 92	100	60 / 60	minus	ABC08195 ABC14526 ABC49974
MLOC	MLOC_47103.2	1524	2e-24	33 - 92	100	60 / 60	minus	ABC08195 ABC14526 ABC49974
JLOC1	JLOC1_30411.1	1653	8e-25	1434 - 1493	100	60 / 60	plus
Harvest21	ABC08195	2362	3e-25	2267 - 2326	100	60 / 60	plus	ABC08195
Harvest35	U35_2243	2676	3e-25	2517 - 2576	100	60 / 60	plus

Contig Sequence (2676 bp)

>U35_2243 2676 Hv_44K_v2
TCGAGCACTGTTGGCCTTGGCTACGACGGCACCACCAACCACCCCCCCCTCCCCTTGTCC
CCTCACCCGATCCACAACACCCCGCGCTCACCGCCTCCCACCCCGACTATGCCTCCCTCG
CGGCCAGGATTGCCGTGTCCAACCTGCACAAGAACACCAAGAAGTCCTTCTCCGAGACGA
TTAAGGACATGTACCTGCACTACAACGAGAGATCTGGGCTGCTGTCTCCGCTGATTGCCG
AGGACATCTACGAAGTCATCATGAAGAACGCTGCTCGCTTGGACAGCGAGATAATTTACG
ACAGGGACTTTGATTATGATTACTTCGGCTTCAAGACTCTGGAGAGGTCTTACCTCCTGA
AGCTTGGTGGAGTTGTTGTCGAGAGGCCGCAGCACATGTTAATGAGGGTTTCAGTAGGGA
TACACAAGGATGACATTGACTCTGCCATCAGGACTTACCATCTCATGTCCCAGCGCTGGT
TTACTCATGCTTCGCCAACCCTTTTCAATGCTGGCACCCCAAGGCCTCAGCTGAGCAGCT
GTTTCCTTATCTGCATGAAAGATGATAGCATCGAGGGAATCTATGATACTCTCAAGGAAT
GTGCTGTCATAAGCAAATCTGCTGGAGGAATTGGTGTCTCTGTTCACAACATTCGTGCTA
CTGGGAGCTATATTCGAGGAACAAATGGAACATCCAATGGGATAGTTCCTATGTTACGTG
TCTTCAATGACACTGCTCGTTATGTAGATCAAGGAGGAGGCAAGAGAAAGGGTGCCTTTG
CTGTATACCTGGAGCCCTGGCATGCTGATATTTTTGAGTTCCTTGATCTGAGGAAGAACC
ATGGCAAGGAGGAGAACCGTGCGAGGGATCTTTTCTTTGCTCTCTGGGTTCCTGATCTAT
TCATGCAAAGAGTGCAAAATAATGAGGATTGGTCCCTGTTTTGTCCTAATGAAGCTCCAG
GGTTGGCTGATTGCTGGGGTGAGAAGTTTGAGGAATTGTACAAGAAATATGAGAAAGCAG
GCAAAGCGAAAAAGGTCATTCCAGCACAGACCCTCTGGTTTGACATTTTGAAGGCACAGA
TAGAAACTGGCACACCTTATATGCTCTATAAGGATTCATGTAATAGGAAAAGTAACCAAC
AGAATCTGGGCACAATCAAATCTTCAAACTTGTGCACTGAGATAATTGAGTTTACAAGTC
CAGAGGAAACTGCTGTCTGCAACTTAGCATCTATTGCTCTGCCACGTTTTGTACGGGAGA
AGGGTGTCCCAATAGAGTCCCATCCATCTAAGCTTGCTGGTAGCAATGGATCAAAAAATA
GATACTTTGACTTTGACAAGTTAGGCGAGGTTACTTCAACTGTTACTTTCAATCTAAACA
AAATAATCGAAATGAACTATTATCCTGTTGAAACTGCAAGGAGGTCTAATATGCGACACA
GGCCAATTGGCATAGGGGTTCAAGGCTTGGCAGATACGTTCATGTTGCTTGGCATGCCAT
TTGATTCACCTGAGGCTCAGCAATTGAATAGGGATATTTTTGAAACTATTTACTATCATG
CTCTGAAAGCTTCTGCCGAATTGGCTGCTAAAGAAGGTCCTTATGAAACATATGAAGGGA
GCCCTGTCAGCAAGGGCATTATCCAACCTGACATGTGGAATGTAGTGCCATCGACCAGAT
GGAACTGGCCAACTTTAAGGGAAACTATTGCTAAAGTTGGAGTAAGAAACTCTCTTCTGG
TGGCTCCAATGCCCACTGCTTCCACCAGTCAGATTCTTGGCAACAATGAGTGCTTTGAAC
CCTACACATCTAACATCTACAGTCGGCGGGTTCTTAGTGGGGAGTTTGTTGTGGTTAACA
AGCATCTTCTCCATGACTTGACTGAGATGGGTATCTGGACACCTGCTTTGAAAAACAAGA
TAATTTATGAAGATGGTTCTATTCAGAAGATGGAAGAAATCCCTGATGATCTTAAAGCAA
TTTACAAGACTGTTTGGGAGATCAAGCAGAAAACTCTGGTTGACATGGCTGTTGATCGTG
GGTGCTACATTGACCAGAGCCAGAGCCTTAATGTCCACATGGATCAACCAAACTTTGCAA
AGCTAACTTCGTTGCATTTCCATGCTTGGTCCAAGGGCCTGAAAACTGGGATGTACTATT
TGAGAACAAGGGCAGCTGCTGATGCAATCAAGTTTACTGTGGATACTGGCTTTCTGAAGG
TCAATGGGGATGCTAATGGCACTAATGGCACTGCTAATGGCAAACTAGCAGAGGAGGACG
ATGAAGCCAAAATGGCGCAAGTTGTCTGCTCCTTGAACAACCGGGAAGAGTGCCTGGCAT
GCGGAAGTTAGACGGATCTGTTGCATCTATTTTTCTCTTAACCAAGGCAGCATTACACAA
CCAAACGGTCTGATCATTGGCATTGAATAATGCGAGAAGAGAGTCGTTTATGTAGGTGCG
GTTGTGTTTAAGAACTGATGAGTTCCTTTGCTGGGCAGCCCTTGATGGCTGAGTTGCCAA
TGTTGGCTTGTTATTTGTACTATCTAAAAACATGGGTTGCTGCAGCTGTATATATATGTA
TCATTGTTTGTGTTAAAAAAAAAAAAAAAAATTGCTGTTATACTTATGCATTAATGTGCA
AGTATTTTTGGTGGTTTAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_2243 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g07210.1	815	protein\|ribonucleoside-diphosphate reductase large subunit, putative, expressed
Brachypodium v1_2	Bradi1g48170.1	815
Arabidopsis v10	AT2G21790.1	816	\| Symbols: R1, RNR1, CLS8, ATRNR1 \| ribonucleotide reductase 1 \| chr2:9293529-9297580 FORWARD LENGTH=816