barSeed - Barley Seed Development Database

Probe CUST_37068_PI390587928

Source Contig U35_2

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37068_PI390587928	Hv_44K_v2	AATGACTTAGCAGCCATGCACATTGCTGCTGCCAAGATGTTCACCAAGAAAGCTGAAACT	576	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374325	1398	3e-21	598 - 657	97	58 / 60	plus	ABC10231
JLOC1	JLOC1_44822.1	1471	4e-23	823 - 882	98	59 / 60	minus
JLOC1	JLOC1_17586.1	884	2e-21	2 - 61	97	58 / 60	plus
Harvest35	U35_2	704	3e-25	577 - 636	100	60 / 60	plus

Contig Sequence (704 bp)

>U35_2 704 Hv_44K_v2
TCCTCCGCGCGCCTAAGGGACCACTTGAGAAATTACTTTCAAATGGCCAACGGGAAGTAT
GCCGTGGCTATGTTATTTCTCACCACCATTGTGGCCGTGGCGGCCATAAGGCCAGCCACC
TATGGCGTTGCGGAGGAGAACACATTGAAGGTGGCTCCCCCCAACAGGAAAGGAGTTGAC
TCTACCTTGGTAGCTACACATGTTGTTGCCGCCGAGAAGCCCATCAAGAAGGCCGAAACC
GCCACCACACCTGAAGAGACCGCGGCTGCCAAGCAAGATGGAGCAAAATCTGCTTCTGCT
ACATCAAAGTACAATGCCATCTCTCAGCAGGAAACTAGTAAAGGTTCTTCTACCTCCCCT
GGCAGGAAAGAAGCCGCAGCTACTTTAGCCGCTACGCACTATGCTGCCGCCGAGAAGTCC
ATCAAGAAGGCCGAAACTGCCACGACACCTGAAGAGGCCGCGGCTGCCAAGCGAGATGCA
GCAAAGTCTGTTGCTGATGCACTAAAGTTTGGTGCCATCTCTCGGCAAGCAGCTGGCACA
AGTTCTTCAACCTCTCCCAACAGCAAAGAAGCCACCAATGACTTAGCAGCCATGCACATT
GCTGCTGCCAAGATGTTCACCAAGAAAGCTGAAACTGCTACCACACGTGAAGAGGCCTCG
GCTGCCAAGCGAGCTGCAGCCAAGTCTACTGCTGCTGCATCCAA

Homology of Contig U35_2 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None