barSeed - Barley Seed Development Database

Probe CUST_37067_PI390587928

Source Contig U35_3

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37067_PI390587928	Hv_44K_v2	TGGTACAAGTTCTTCTACATCCCCCAACAGAAAAGAAGCCACCAATGACTTAGCAGCCAT	531	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374325	1398	2e-24	555 - 614	100	60 / 60	plus	ABC10231
Harvest21	ABC28683	599	3e-25	532 - 591	100	60 / 60	plus
Harvest35	U35_3	599	3e-25	532 - 591	100	60 / 60	plus

Contig Sequence (599 bp)

>U35_3 599 Hv_44K_v2
CGCGCGCCTAAGGGACCACTTGAGGAATTACTTACAAATGGCCAACGGAAAGTATGCCGT
GGCTATGTTATTTCTCACCACTATTGTGGCCGTGGCGGCCATAAGGCCAGCCGACACCTA
TGGCGCCGCGGAGGAGAACACATTGAAGATGGCTCCCCCCAACAGGAAAGGAGTTGACTC
TACCTTAGTAGCTACACATATTGTTGTCGCCGAGAAGCCCATCAAGAAGGCCGAAATCGC
CACGACACCTGAAGAGGCCGCGACTGCCAAGCAAGATGGAGCAAAATCTGCTTCTGCTGC
ATCAAAGTACAATGCCATCTCTCAGCAGGAAACTAGTAAAGGTTCTTCTATCTCCCCCGT
CAAGAAAGAAGCCGCCGCTACTTTAGCCGCTACGCATTATACTGCCGCCGAGAAGTCCAT
CAAGAAGGCCGAAACTGCCAGGACCCCTGAAGAGGCCGCGGCTGCCAAGCGAGATGCATC
AAAGTCTGTTGCTGATGCATTGAAGTTTGGCGCCATCTCTCGGCAAGCAGCTGGTACAAG
TTCTTCTACATCCCCCAACAGAAAAGAAGCCACCAATGACTTAGCAGCCATGCACATTG

Homology of Contig U35_3 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None