barSeed - Barley Seed Development Database

Probe CUST_37059_PI390587928

Source Contig U35_30721

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37059_PI390587928	Hv_44K_v2	GAAAGTTTGGAAGAAGATTGTTGAGCATGAACTCTGTAACAGTTGTCTAATATTTTGCAG	500	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80445.2	1625	2e-24	473 - 532	100	60 / 60	plus	ABC15197 ABC30030
JLOC1	JLOC1_53557.3	1547	8e-25	313 - 372	100	60 / 60	plus
Harvest21	ABC30756	643	3e-25	501 - 560	100	60 / 60	plus
Harvest35	U35_30721	643	3e-25	501 - 560	100	60 / 60	plus

Contig Sequence (643 bp)

>U35_30721 643 Hv_44K_v2
TATGTTTTAATGCTATTGCAAAAAAAAGGGCAGCCCGATGCACGTTGCTCCCGCTTGCAC
AAGGTCCGGGGAAGGGTCTTAATCCCATTGTAAAAAAATAAATACTTCCTCCACCCAGAA
TTGTAAGGCACGCGCGCGCACACACACACACACTTCTCAAATTTGCTGGTCAATAGTATG
TGGATAACGTTAATACAAAAATTGGTATCGTTGGATTCATCCTAAAAGCACTTTTCAGTG
GTATCAATTTGTACGAGACAATCCACATAGTTGGGCAAATCGTTGGTCAAAGTTACATCT
TGGAAACGTGCATTCCTTCCTTATATTTCTGGAGAGAGTTATTGAAGATAAATTTTACTG
CCAAAGTTCCAGAAGTCTTGAATTATGTTTAATGAGGTCATAGAACTCCCTAGCCTTTGC
CATTTATACTTCTATTTGACTGTTCATCTTAACCACAATACACCCAACATGTTCAGATTT
GTCATGACAAATTGCCACGTGAAAGTTTGGAAGAAGATTGTTGAGCATGAACTCTGTAAC
AGTTGTCTAATATTTTGCAGCAAGAGCGTGAGTACTATGAATACATCATTAAAGAGGGAA
AGATTATCCACAGGGTATCTGAAGAAGCACTTGATACAAGCCA

Homology of Contig U35_30721 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None