barSeed - Barley Seed Development Database

Probe CUST_36986_PI390587928

Source Contig U35_12214

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36986_PI390587928	Hv_44K_v2	CCTGATAATGTGCTTCATGTTTATGATCTGGTTGAGGTACAGGATGATTATTATGAAGAT	828	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17825.1	2237	7e-23	756 - 815	98	59 / 60	minus	ABC21021 ABC22074
Harvest21	ABC22812	953	3e-25	829 - 888	100	60 / 60	plus
Harvest35	U35_12214	953	3e-25	829 - 888	100	60 / 60	plus

Contig Sequence (953 bp)

>U35_12214 953 Hv_44K_v2
CTCCATTCTCTCAGGTCCATGGGCCAATTATGTTGGAACTCCAGGTGGAACTATACCATT
TTCAACCAACAGTGGAGCCTTTGAGTTTCAAGGTGCTAATGGTGTGATACCCAATTGGAG
ACCTAGGCCTTCTACTCGGATGAGGGGGGTAGGACTTTCTCTAAGAAGGATATTAGGAAC
ATTTTGATTGACAAGATGAAGAGCGATTTGAGGGAGAAGCTAAAGGAGATAAGAAGTAAA
CCACTCCAAGTTACAGTTAATGGAAAAGCAAGCGAGAAACATGTGGTTAACGAACATGTT
GAGGGTAATGAAACTCTTGCGTCAGATGATTCTACTACAAACAAAGATGTCTGCGCTGAT
CCAGAGGAGAATGGTTCTGCTAATAGTGCAGATGCTGAAAATGAAGATGACAGCACTTTC
TCCTATACTGTTCCTGATCCTGATTTCCATGATTTTGACAAGGATCGTACCGAGGAATCT
TTTCAGAGTGATCAAATTTGGGCTTCATATGATGACGAAGATGGCATGCCTCGTTATTAT
GCATATATTCAGAAAGTTATCTCCTTGAATCCATTTAAGGTCAAAATAAGTTATCTCGCA
TCGAGGACAAATAGTGAATTTGGACCATTGAATTGGGCTTCTTCCGGCTTCATAAAGACA
TGCGGTGATTTCAGGATTGGTAGATATGAAACCGTAGATATAATCAACATGTTCTCTCAC
CAGATTAAATGGGAGAAAGGTCCACGTGGGGTGGTCAAAATTTATCCGCAGAAAGGCGAT
ATCTGGGCTTTGTACCGAAATTGGTCCCCTCATTGGAATGGAGATACTCCTGATAATGTG
CTTCATGTTTATGATCTGGTTGAGGTACAGGATGATTATTATGAAGATAATGGAATTTCT
GTCATTCCCTTGATTAAGCTCACTGGATTTCGAACAGTTTTCCAGCGTCATCA

Homology of Contig U35_12214 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g28310.1	749	7e-134	protein\|dnaJ domain containing protein, expressed
Brachypodium v1_2	Bradi1g52400.1	750	3e-159
Arabidopsis v10	AT5G53150.1	726	8e-77	DNAJ heat shock N-terminal domain-containing protein \| chr5:21554935-21557202 FORWARD LENGTH=726